Last updated on 2025-12-25 19:50:59 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/306s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.860, system: 0.113, elapsed: 6.505 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.529, system: 0.527, elapsed: 26.519 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.040, elapsed: 0.923 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.099, system: 0.838, elapsed: 13.216 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.012, elapsed: 0.195 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.586, system: 1.862, elapsed: 50.168 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.665, system: 0.070, elapsed: 2.052 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.391, system: 0.434, elapsed: 43.569 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.038, elapsed: 1.220 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.330, system: 0.965, elapsed: 29.148 seconds]
Computing values for grid cells...
... done. [user: 0.216, system: 0.029, elapsed: 0.873 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.497, system: 1.895, elapsed: 80.377 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.972, system: 0.140, elapsed: 9.099 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.474, system: 0.511, elapsed: 33.673 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.032, elapsed: 0.515 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 5.360, system: 1.002, elapsed: 20.481 seconds]
Computing values for grid cells...
... done. [user: 0.197, system: 0.023, elapsed: 0.833 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.552, system: 0.505, elapsed: 3.792 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.611, system: 2.658, elapsed: 72.175 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 2.088, system: 0.205, elapsed: 4.077 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.475, system: 0.600, elapsed: 22.477 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.034, elapsed: 1.361 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.859, system: 0.666, elapsed: 16.345 seconds]
Computing values for grid cells...
... done. [user: 0.207, system: 0.016, elapsed: 1.013 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.407, system: 1.225, elapsed: 38.020 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.087, system: 3.136, elapsed: 87.210 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/307s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.762, system: 0.091, elapsed: 6.504 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.213, system: 0.322, elapsed: 41.568 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.034, elapsed: 0.932 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.808, system: 0.802, elapsed: 20.222 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.010, elapsed: 0.605 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.920, system: 1.681, elapsed: 73.714 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.707, system: 0.078, elapsed: 6.058 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.166, system: 0.322, elapsed: 38.785 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.035, elapsed: 0.879 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.802, system: 0.823, elapsed: 17.648 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.008, elapsed: 0.557 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.804, system: 1.735, elapsed: 68.088 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.703, system: 0.072, elapsed: 5.612 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.124, system: 0.253, elapsed: 28.186 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.040, elapsed: 0.673 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.860, system: 0.736, elapsed: 15.172 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.013, elapsed: 0.552 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.316, system: 0.445, elapsed: 2.970 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.234, system: 1.897, elapsed: 56.653 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.668, system: 0.050, elapsed: 4.056 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.095, system: 0.193, elapsed: 27.462 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.036, elapsed: 0.653 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.853, system: 0.731, elapsed: 15.465 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.008, elapsed: 0.408 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.050, system: 1.209, elapsed: 37.673 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 29.880, system: 2.619, elapsed: 88.953 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64