Last updated on 2025-12-25 19:50:47 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| baytrends | 1 | 1 | 11 |
| BioMonTools | 1 | 12 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 2.0.12
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Erik W Leppo <Erik.Leppo@tetratech.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Rebecca",
family = "Murphy",
role = "aut"),
person(given = "Elgin",
family = "Perry",
role = "aut"),
person(given = "Jennifer",
family = "Keisman",
role = "aut"),
person(given = "Jon",
family = "Harcum",
role = "aut"),
person(given = c("Erik", "W"),
family = "Leppo",
role = c("aut", "cre"),
email = "erik.leppo@tetratech.com"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.12
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Detrending_Flow_and_Salinity_Data.Rmd’ using rmarkdown
Quitting from Detrending_Flow_and_Salinity_Data.Rmd:80-96 [flow1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [waterservices.usgs.gov]:
Connection timed out after 10002 milliseconds
---
Backtrace:
▆
1. └─baytrends::detrended.flow(...)
2. └─baytrends::getUSGSflow(...)
3. └─dataRetrieval::readNWISdv(...)
4. └─dataRetrieval::importWaterML1(url, asDateTime = FALSE)
5. └─dataRetrieval:::check_if_xml(obs_url)
6. └─dataRetrieval::getWebServiceData(obs_url)
7. └─httr2::req_perform(obs_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Detrending_Flow_and_Salinity_Data.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [waterservices.usgs.gov]:
Connection timed out after 10002 milliseconds
--- failed re-building ‘Detrending_Flow_and_Salinity_Data.Rmd’
--- re-building ‘Processing_Censored_Data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Processing_Censored_Data.Rmd’
SUMMARY: processing the following file failed:
‘Detrending_Flow_and_Salinity_Data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in 'BioMonTools-Ex.R' failed
The error most likely occurred in:
> ### Name: qc_taxa
> ### Title: Quality Control Check on User Data Against Master Taxa List
> ### Aliases: qc_taxa
>
> ### ** Examples
>
> # Example 1, Master Taxa List, Bugs
> url_mt_bugs <- "https://github.com/leppott/MBSStools_SupportFiles/raw/master/Data/CHAR_Bugs.csv"
> df_mt_bugs <- read.csv(url_mt_bugs)
>
> # User data
> DF_User <- data_benthos_MBSS
> DF_Official <- NULL # NULL df_mt_bugs
> fun.Community <- "bugs"
> useOfficialTaxaInfo <- "only_Official"
> # modify taxa id column
> DF_User[, "TAXON"] <- DF_User[, "TAXAID"]
>
> df_qc_taxa_bugs <- qc_taxa(DF_User,
+ DF_Official,
+ fun.Community,
+ useOfficialTaxaInfo)
Warning in file(file, "rt") :
URL 'https://github.com/leppott/MBSStools_SupportFiles/raw/master/Data/CHAR_Bugs.csv': status was 'Server returned nothing (no headers, no data)'
Error in file(file, "rt") :
cannot open the connection to 'https://github.com/leppott/MBSStools_SupportFiles/raw/master/Data/CHAR_Bugs.csv'
Calls: qc_taxa -> <Anonymous> -> read.table -> file
Execution halted
Flavor: r-oldrel-windows-x86_64