cuperdec: Cumulative Percent Decay Curve Generator
Calculates and visualises cumulative percent 'decay' curves,
which are typically calculated from metagenomic taxonomic profiles.
These can be used to estimate the level of expected 'endogenous' taxa
at different abundance levels retrieved from metagenomic samples, when
comparing to samples of known sampling site or source. Method
described in Fellows Yates, J. A. et. al. (2021) Proceedings of the
National Academy of Sciences USA <doi:10.1073/pnas.2021655118>.
| Version: |
1.1.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
dplyr, ggplot2, magrittr, readr, rlang, tidyr |
| Suggests: |
knitr, rmarkdown, testthat, tibble |
| Published: |
2021-09-12 |
| DOI: |
10.32614/CRAN.package.cuperdec |
| Author: |
James A. Fellows Yates
 [aut, cre] |
| Maintainer: |
James A. Fellows Yates <jfy133 at gmail.com> |
| BugReports: |
https://github.com/jfy133/cuperdec/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/jfy133/cuperdec |
| NeedsCompilation: |
no |
| Language: |
en-GB |
| Citation: |
cuperdec citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
cuperdec results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=cuperdec
to link to this page.