adapt3: Adaptive Dynamics and Community Matrix Model Projections
Runs projections of groups of matrix projection models (MPMs), allowing density dependence mechanisms to work across MPMs. This package was developed to run both adaptive dynamics simulations such as pairwise and multiple invasibility analyses, and community projections in which species are represented by MPMs. All forms of MPMs are allowed, including integral projection models (IPMs). Also includes individual-based modeling (IBM) versions of these.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.12), lefko3, methods, rlang, grDevices |
| LinkingTo: | Rcpp, RcppArmadillo, BH, lefko3 |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-07-16 |
| DOI: | 10.32614/CRAN.package.adapt3 |
| Author: | Richard P. Shefferson
 [aut, cre] |
| Maintainer: | Richard P. Shefferson <cdorm at g.ecc.u-tokyo.ac.jp> |
| BugReports: | https://github.com/dormancy1/adapt3/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/dormancy1/adapt3 |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | adapt3 results |
Documentation:
| Reference manual: | adapt3.html , adapt3.pdf |
| Vignettes: |
Community matrix projection (source) Pairwise invasibility analysis (source) |
Downloads:
| Package source: | adapt3_1.0.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): adapt3_1.0.1.tgz, r-oldrel (x86_64): adapt3_1.0.1.tgz |
Linking:
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