SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Version: 3.0.0
Depends: R (≥ 4.0.0)
Suggests: assertthat, circlize, cli, cluster, colorspace, ComplexHeatmap, covr, decoupleR, dplyr (≥ 1.1.0), enrichplot, forcats, ggalluvial (≥ 0.12.5), ggbeeswarm, ggdist, ggExtra, ggh4x, ggplot2 (≥ 3.4.0), ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics, infercnv, KernSmooth, knitr, labeling, magrittr, MASS, Matrix, methods, Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf, RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore, Seurat, SeuratObject, sf, stringr, svglite, testthat (≥ 3.0.0), tibble, tidyr, UCell, viridis, waffle, withr
Published: 2025-08-20
Author: Enrique Blanco-Carmona ORCID iD [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr at gmail.com>
BugReports: https://github.com/enblacar/SCpubr/issues/
License: GPL-3
URL: https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/
NeedsCompilation: no
Citation: SCpubr citation info
Materials: README, NEWS
CRAN checks: SCpubr results

Documentation:

Reference manual: SCpubr.html , SCpubr.pdf
Vignettes: reference_manual (source)

Downloads:

Package source: SCpubr_3.0.0.tar.gz
Windows binaries: r-devel: SCpubr_3.0.0.zip, r-release: SCpubr_3.0.0.zip, r-oldrel: SCpubr_3.0.0.zip
macOS binaries: r-release (arm64): SCpubr_3.0.0.tgz, r-oldrel (arm64): SCpubr_3.0.0.tgz, r-release (x86_64): SCpubr_3.0.0.tgz, r-oldrel (x86_64): SCpubr_3.0.0.tgz
Old sources: SCpubr archive

Linking:

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