Last updated on 2025-12-25 19:50:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.9 | 3.37 | 51.34 | 54.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.9 | 2.21 | 36.19 | 38.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.9 | 84.14 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.9 | 101.61 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.9 | 7.00 | 73.00 | 80.00 | OK | |
| r-patched-linux-x86_64 | 1.1.9 | 3.26 | 48.45 | 51.71 | OK | |
| r-release-linux-x86_64 | 1.1.9 | 2.43 | 49.14 | 51.57 | OK | |
| r-release-macos-arm64 | 1.1.9 | OK | ||||
| r-release-macos-x86_64 | 1.1.9 | 2.00 | 56.00 | 58.00 | OK | |
| r-release-windows-x86_64 | 1.1.9 | 6.00 | 74.00 | 80.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.9 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.1.9 | 2.00 | 45.00 | 47.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.1.9 | 8.00 | 88.00 | 96.00 | NOTE |
Version: 1.1.9
Check: examples
Result: ERROR
Running examples in ‘rADA-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: scpForestPlot
> ### Title: Generate forest plot of SCP values
> ### Aliases: scpForestPlot scpForestPlot,ImmunoAssay-method
>
> ### ** Examples
>
> assay.obj <- importAssay(assay.df = lognormAssay, exp.name = 'Experiment1')
> assay.obj <- scp(assay.obj, category = 'Experiment1', distrib = 'normal',
+ data.transf = TRUE, transf.method = 'log10', rm.out = FALSE)
> scpForestPlot(assay.obj)
Error in xtfrm.data.frame(list(mean = 23.0524633087061, upper = 23.5679826580867, :
cannot xtfrm data frames
Calls: scpForestPlot ... prFpConvertMultidimArray -> xtfrm -> xtfrm.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rada_vignette.Rmd’ using knitr
Quitting from rada_vignette.Rmd:392-396 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xtfrm.data.frame()`:
! cannot xtfrm data frames
---
Backtrace:
▆
1. ├─rADA::scpForestPlot(assay.obj)
2. └─rADA::scpForestPlot(assay.obj)
3. ├─forestplot::forestplot(...)
4. └─forestplot:::forestplot.default(...)
5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean)
6. └─forestplot:::prFpConvertMultidimArray(mean)
7. ├─base::xtfrm(`<df[,3]>`)
8. └─base::xtfrm.data.frame(`<df[,3]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rada_vignette.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘rada_vignette.Rmd’
--- re-building ‘rada_vignette_supplemental.Rmd’ using knitr
Quitting from rada_vignette_supplemental.Rmd:392-396 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xtfrm.data.frame()`:
! cannot xtfrm data frames
---
Backtrace:
▆
1. ├─rADA::scpForestPlot(assay.obj)
2. └─rADA::scpForestPlot(assay.obj)
3. ├─forestplot::forestplot(...)
4. └─forestplot:::forestplot.default(...)
5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean)
6. └─forestplot:::prFpConvertMultidimArray(mean)
7. ├─base::xtfrm(`<df[,3]>`)
8. └─base::xtfrm.data.frame(`<df[,3]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rada_vignette_supplemental.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘rada_vignette_supplemental.Rmd’
SUMMARY: processing the following files failed:
‘rada_vignette.Rmd’ ‘rada_vignette_supplemental.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.9
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘Hmisc’ ‘car’ ‘dplyr’ ‘grid’ ‘gridExtra’ ‘knitr’ ‘lmerTest’ ‘tidyr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.9
Check: examples
Result: ERROR
Running examples in ‘rADA-Ex.R’ failed
The error most likely occurred in:
> ### Name: scpForestPlot
> ### Title: Generate forest plot of SCP values
> ### Aliases: scpForestPlot scpForestPlot,ImmunoAssay-method
>
> ### ** Examples
>
> assay.obj <- importAssay(assay.df = lognormAssay, exp.name = 'Experiment1')
> assay.obj <- scp(assay.obj, category = 'Experiment1', distrib = 'normal',
+ data.transf = TRUE, transf.method = 'log10', rm.out = FALSE)
> scpForestPlot(assay.obj)
Error in xtfrm.data.frame(list(mean = 23.0524633087061, upper = 23.5679826580867, :
cannot xtfrm data frames
Calls: scpForestPlot ... prFpConvertMultidimArray -> xtfrm -> xtfrm.data.frame
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘rada_vignette.Rmd’ using knitr
Quitting from rada_vignette.Rmd:392-396 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xtfrm.data.frame()`:
! cannot xtfrm data frames
---
Backtrace:
▆
1. ├─rADA::scpForestPlot(assay.obj)
2. └─rADA::scpForestPlot(assay.obj)
3. ├─forestplot::forestplot(...)
4. └─forestplot:::forestplot.default(...)
5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean)
6. └─forestplot:::prFpConvertMultidimArray(mean)
7. ├─base::xtfrm(`<df[,3]>`)
8. └─base::xtfrm.data.frame(`<df[,3]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rada_vignette.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘rada_vignette.Rmd’
--- re-building ‘rada_vignette_supplemental.Rmd’ using knitr
Quitting from rada_vignette_supplemental.Rmd:392-396 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xtfrm.data.frame()`:
! cannot xtfrm data frames
---
Backtrace:
▆
1. ├─rADA::scpForestPlot(assay.obj)
2. └─rADA::scpForestPlot(assay.obj)
3. ├─forestplot::forestplot(...)
4. └─forestplot:::forestplot.default(...)
5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean)
6. └─forestplot:::prFpConvertMultidimArray(mean)
7. ├─base::xtfrm(`<df[,3]>`)
8. └─base::xtfrm.data.frame(`<df[,3]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rada_vignette_supplemental.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘rada_vignette_supplemental.Rmd’
SUMMARY: processing the following files failed:
‘rada_vignette.Rmd’ ‘rada_vignette_supplemental.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.9
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64