Last updated on 2025-09-02 08:50:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 6.48 | 107.93 | 114.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 3.82 | 74.25 | 78.07 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 176.44 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 275.88 | OK | |||
| r-devel-windows-x86_64 | 1.4.0 | 7.00 | 103.00 | 110.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 6.20 | 99.55 | 105.75 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 5.55 | 100.13 | 105.68 | OK | |
| r-release-macos-arm64 | 1.4.0 | 173.00 | ERROR | |||
| r-release-macos-x86_64 | 1.4.0 | 214.00 | OK | |||
| r-release-windows-x86_64 | 1.4.0 | 8.00 | 125.00 | 133.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 88.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4.0 | 196.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4.0 | 11.00 | 132.00 | 143.00 | OK |
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/146s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pkgload)
>
> # Needed so that install.packages works correctly
> Sys.setenv("R_TESTS" = "")
>
> test_check("pkgload")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 344 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• "pkgload" %in% dev_packages() is not TRUE (1): 'test-shim.R:126:3'
• On CRAN (14): 'test-depend.R:5:3', 'test-depend.R:15:3',
'test-depend.R:43:3', 'test-load-hooks.R:155:3', 'test-load.R:44:3',
'test-namespace.R:140:3', 'test-shim.R:59:3', 'test-shim.R:135:3',
'test-source.R:2:3', 'test-help.R:57:3', 'test-help.R:117:3',
'test-help.R:128:3', 'test-help.R:141:3', 'test-help.R:162:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-help.R:48:3'): shim_question behaves like util::? for searches ──
shim_question(`?`(lm)) (`actual`) not identical to utils::`?`(`?`(lm)) (`expected`).
attr(actual$matches, 'row.names')[18948:19009] vs attr(expected$matches, 'row.names')[18948:18950]
18948
18949
18950
- 18951
- 18952
- 18953
- 18954
- 18955
- 18956
- 18957
and 52 more ...
actual$matches vs expected$matches
Topic Title Name ID Package LibPath Type Field Entry
actual$matches[4021, ] eight_elman the original SNNS eight elman example, using the RSNNS high-level api (rsnns) eight_elman 4917/86 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo Title the original SNNS eight elman example, using the RSNNS high-level api (rsnns)
actual$matches[4022, ] eight_elmanSnnsR the original SNNS eight elman example, using the RSNNS low-level api (SnnsR) eight_elmanSnnsR 4917/87 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo alias eight_elmanSnnsR
actual$matches[4023, ] eight_elmanSnnsR the original SNNS eight elman example, using the RSNNS low-level api (SnnsR) eight_elmanSnnsR 4917/87 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo Title the original SNNS eight elman example, using the RSNNS low-level api (SnnsR)
- actual$matches[4024, ] LogisticRegressionFast Logistic Regression implementation that uses R's glm LogisticRegressionFast 4920/23 RSSL /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSSL help Title Logistic Regression implementation that uses R's glm
+ expected$matches[4024, ] LogisticRegressionFast Logistic Regression implementation that uses R's glm LogisticRegressionFast 4921/23 RSSL /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSSL help Title Logistic Regression implementation that uses R's glm
- actual$matches[4025, ] CalculateLModeCCFI Calculates L-Mode CCFI CalculateLModeCCFI 4952/10 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias CalculateLModeCCFI
+ expected$matches[4025, ] CalculateLModeCCFI Calculates L-Mode CCFI CalculateLModeCCFI 4953/10 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias CalculateLModeCCFI
- actual$matches[4026, ] EstimateLMode Estimates L-Mode base rate EstimateLMode 4952/26 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias EstimateLMode
+ expected$matches[4026, ] EstimateLMode Estimates L-Mode base rate EstimateLMode 4953/26 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias EstimateLMode
- actual$matches[4027, ] RunLMode Performs L-Mode RunLMode 4952/37 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias RunLMode
+ expected$matches[4027, ] RunLMode Performs L-Mode RunLMode 4953/37 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias RunLMode
- actual$matches[4028, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4957/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clm
+ expected$matches[4028, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4958/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clm
- actual$matches[4029, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4957/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clmm
+ expected$matches[4029, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4958/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clmm
- actual$matches[4030, ] logis.noise Creating a nls model for logistic regression from fitted values of a glm model logis.noise 4957/66 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help Title Creating a nls model for logistic regression from fitted values of a glm model
+ expected$matches[4030, ] logis.noise Creating a nls model for logistic regression from fitted values of a glm model logis.noise 4958/66 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help Title Creating a nls model for logistic regression from fitted values of a glm model
and 1491 more ...
actual$matches vs expected$matches
Topic Title Name ID Package LibPath Type Field Entry
actual$matches[11790, ] lmboot-package Bootstrap in Linear Models lmboot-package 13967/4 lmboot /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmboot help alias lmboot
actual$matches[11791, ] lmds Landmark MDS lmds 13968/2 lmds /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds help alias lmds
actual$matches[11792, ] lmds Landmark MDS lmds 13968/2 lmds /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds help alias lmds-package
- actual$matches[11793, ] confint.merMod Compute Confidence Intervals for Parameters of a [ng]lmer Fit confint.merMod 13969/17 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Compute Confidence Intervals for Parameters of a [ng]lmer Fit
+ expected$matches[11793, ] getMME Build the mixed model equations from a lmebreed object getMME 13969/27 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help Title Build the mixed model equations from a lmebreed object
- actual$matches[11794, ] glmFamily-class Class '"glmFamily"' - a reference class for 'family' glmFamily-class 13969/29 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmFamily-class
+ expected$matches[11794, ] lme4breeding *L*inear *m*ixed *e*quations *4* *B*reeding lme4breeding-package 13969/30 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lme4breeding
- actual$matches[11795, ] glmFamily-class Class '"glmFamily"' - a reference class for 'family' glmFamily-class 13969/29 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Class '"glmFamily"' - a reference class for 'family'
+ expected$matches[11795, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lmebreed-class
- actual$matches[11796, ] glmFamily Generator object for the 'glmFamily' class glmFamily 13969/30 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmFamily
+ expected$matches[11796, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias fitted,lmebreed-method
- actual$matches[11797, ] glmFamily Generator object for the 'glmFamily' class glmFamily 13969/30 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Generator object for the 'glmFamily' class
+ expected$matches[11797, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias ranef,lmebreed-method
- actual$matches[11798, ] glmer Fitting Generalized Linear Mixed-Effects Models glmer 13969/31 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmer
+ expected$matches[11798, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias residuals,lmebreed-method
- actual$matches[11799, ] glmer Fitting Generalized Linear Mixed-Effects Models glmer 13969/31 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help concept GLMM
+ expected$matches[11799, ] lmebreed Fit mixed-effects models incorporating relationships lmebreed 13969/32 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lmebreed
and 7210 more ...
actual$matches$Topic | expected$matches$Topic
[11790] "lmboot-package" | "lmboot-package" [11790]
[11791] "lmds" | "lmds" [11791]
[11792] "lmds" | "lmds" [11792]
[11793] "confint.merMod" -
[11794] "glmFamily-class" -
[11795] "glmFamily-class" -
[11796] "glmFamily" -
[11797] "glmFamily" -
[11798] "glmer" -
[11799] "glmer" -
... ... ... and 55 more ...
actual$matches$Title[11790:11854] vs expected$matches$Title[11790:11795]
"Bootstrap in Linear Models"
"Landmark MDS"
"Landmark MDS"
- "Compute Confidence Intervals for Parameters of a [ng]lmer Fit"
- "Class '\"glmFamily\"' - a reference class for 'family'"
- "Class '\"glmFamily\"' - a reference class for 'family'"
- "Generator object for the 'glmFamily' class"
- "Generator object for the 'glmFamily' class"
- "Fitting Generalized Linear Mixed-Effects Models"
- "Fitting Generalized Linear Mixed-Effects Models"
and 55 more ...
actual$matches$Name | expected$matches$Name
[11790] "lmboot-package" | "lmboot-package" [11790]
[11791] "lmds" | "lmds" [11791]
[11792] "lmds" | "lmds" [11792]
[11793] "confint.merMod" -
[11794] "glmFamily-class" -
[11795] "glmFamily-class" -
[11796] "glmFamily" -
[11797] "glmFamily" -
[11798] "glmer" -
[11799] "glmer" -
... ... ... and 55 more ...
actual$matches$ID | expected$matches$ID
[4021] "4917/86" | "4917/86" [4021]
[4022] "4917/87" | "4917/87" [4022]
[4023] "4917/87" | "4917/87" [4023]
[4024] "4920/23" - "4921/23" [4024]
[4025] "4952/10" - "4953/10" [4025]
[4026] "4952/26" - "4953/26" [4026]
[4027] "4952/37" - "4953/37" [4027]
[4028] "4957/1" - "4958/1" [4028]
[4029] "4957/1" - "4958/1" [4029]
[4030] "4957/66" - "4958/66" [4030]
... ... ... and 1491 more ...
actual$matches$ID | expected$matches$ID
[11790] "13967/4" | "13967/4" [11790]
[11791] "13968/2" | "13968/2" [11791]
[11792] "13968/2" | "13968/2" [11792]
[11793] "13969/17" - "13969/27" [11793]
[11794] "13969/29" - "13969/30" [11794]
[11795] "13969/29" - "13969/31" [11795]
[11796] "13969/30" - "13969/31" [11796]
[11797] "13969/30" - "13969/31" [11797]
[11798] "13969/31" | "13969/31" [11798]
[11799] "13969/31" - "13969/32" [11799]
... ... ... and 7210 more ...
actual$matches$Package | expected$matches$Package
[11790] "lmboot" | "lmboot" [11790]
[11791] "lmds" | "lmds" [11791]
[11792] "lmds" | "lmds" [11792]
[11793] "lme4" -
[11794] "lme4" -
[11795] "lme4" -
[11796] "lme4" -
[11797] "lme4" -
[11798] "lme4" -
[11799] "lme4" -
... ... ... and 55 more ...
actual$matches$LibPath[11790:11854] vs expected$matches$LibPath[11790:11795]
"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmboot"
"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds"
"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
- "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4"
and 55 more ...
actual$matches$Type | expected$matches$Type
[11797] "help" | "help" [11797]
[11798] "help" | "help" [11798]
[11799] "help" | "help" [11799]
[11800] "help" -
[11801] "help" -
[11802] "help" -
[11803] "help" -
[11804] "help" -
[11805] "help" -
[11806] "help" -
... ... ... and 55 more ...
actual$matches$Field | expected$matches$Field
[11792] "alias" | "alias" [11792]
[11793] "Title" | "Title" [11793]
[11794] "alias" | "alias" [11794]
[11795] "Title" -
[11796] "alias" -
[11797] "Title" -
[11798] "alias" -
[11799] "concept" -
[11800] "alias" | "alias" [11795]
[11801] "concept" -
... ... ... and 56 more ...
actual$matches$Field | expected$matches$Field
[11861] "alias" | "alias" [11820]
[11862] "Title" | "Title" [11821]
[11863] "alias" | "alias" [11822]
[11864] "Title" -
[11865] "alias" | "alias" [11823]
[11866] "Title" -
[11867] "Title" -
[11868] "alias" | "alias" [11824]
[11869] "alias" | "alias" [11825]
[11870] "alias" | "alias" [11826]
... ... ... and 20 more ...
actual$matches$Entry[11790:11854] vs expected$matches$Entry[11790:11795]
"lmboot"
"lmds"
"lmds-package"
- "Compute Confidence Intervals for Parameters of a [ng]lmer Fit"
- "glmFamily-class"
- "Class '\"glmFamily\"' - a reference class for 'family'"
- "glmFamily"
- "Generator object for the 'glmFamily' class"
- "glmer"
- "GLMM"
and 55 more ...
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 344 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64