Last updated on 2025-09-25 19:51:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.6 | 684.97 | 268.20 | 953.17 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 0.2.6 | 445.72 | 179.08 | 624.80 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 0.2.6 | 1653.51 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.6 | 1664.03 | WARN | |||
| r-devel-windows-x86_64 | 0.2.6 | 758.00 | 385.00 | 1143.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.6 | 702.94 | 254.47 | 957.41 | WARN | |
| r-release-linux-x86_64 | 0.2.6 | 710.66 | 252.77 | 963.43 | WARN | |
| r-release-macos-arm64 | 0.2.6 | 396.00 | NOTE | |||
| r-release-macos-x86_64 | 0.2.6 | 492.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.6 | 781.00 | 407.00 | 1188.00 | WARN | |
| r-oldrel-macos-arm64 | 0.2.6 | 377.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.6 | 417.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.6 | 926.00 | 475.00 | 1401.00 | WARN |
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.6
Check: Rd files
Result: NOTE
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces
45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr
| ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces; missing escapes or markup?
45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr
| ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces
45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-clang/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘clang version 21.1.1’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-devel/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
Flavor: r-patched-linux-x86_64
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/jSDM.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
Flavor: r-release-linux-x86_64
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.5/jSDM.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
Flavor: r-release-windows-x86_64
Version: 0.2.6
Check: installed package size
Result: NOTE
installed size is 34.2Mb
sub-directories of 1Mb or more:
libs 32.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.2.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rcpp_jSDM_useful.cpp:85:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:120:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:154:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:220:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:257:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:292:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:326:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
Rcpp_jSDM_useful.cpp:392:23: warning: 'bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.4/jSDM.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
Flavor: r-oldrel-windows-x86_64