Last updated on 2025-12-25 19:50:48 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| CITMIC | 13 | |||
| DrugSim2DR | 13 | |||
| DRviaSPCN | 2 | 11 | ||
| DTSEA | 13 | |||
| ICDS | 1 | 1 | 11 | |
| IDMIR | 1 | 12 | ||
| iPRISM | 13 | |||
| MiRSEA | 2 | 11 | ||
| PMAPscore | 1 | 1 | 2 | 9 |
| psSubpathway | 2 | 11 | ||
| SMDIC | 13 | |||
| ssMutPA | 13 | |||
| SubtypeDrug | 1 | 3 | 9 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.5
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, WARN: 1, OK: 11
Version: 0.1.3
Check: CRAN incoming feasibility
Result: WARN
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
Strong dependencies not in the CRAN or BioC software repositories:
org.Hs.eg.db
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘graphite’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.1
Check: examples
Result: ERROR
Running examples in ‘IDMIR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PlotForest
> ### Title: PlotForest
> ### Aliases: PlotForest
>
> ### ** Examples
>
> # Obtain the example data
> GEP<-GetData_Mirna("GEP")
> survival<-GetData_Mirna("survival")
> MiRNAs<-c("hsa-miR-21-5p","hsa-miR-26a-5p","hsa-miR-369-5p","hsa-miR-1238-3p","hsa-miR-10b-5p")
> # Run the function
> SingleMiRNA_CRData<-SingleMiRNA_CRModel(GEP,
+ "hsa-miR-21-5p",survival,cutoff.point=NULL)
> PlotForest(SingleMiRNA_CRData)
Error in xtfrm.data.frame(list(HR = 0.852413303068293, HR.95L = 0.707120128638027, :
cannot xtfrm data frames
Calls: PlotForest ... prFpConvertMultidimArray -> xtfrm -> xtfrm.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘IDMIR.Rmd’ using rmarkdown
Quitting from IDMIR.Rmd:160-170 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `xtfrm.data.frame()`:
! cannot xtfrm data frames
---
Backtrace:
▆
1. └─IDMIR::PlotForest(SingleMiRNA_CRData)
2. ├─forestplot::forestplot(...)
3. └─forestplot:::forestplot.default(...)
4. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean)
5. └─forestplot:::prFpConvertMultidimArray(mean)
6. ├─base::xtfrm(`<df[,3]>`)
7. └─base::xtfrm.data.frame(`<df[,3]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'IDMIR.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building ‘IDMIR.Rmd’
SUMMARY: processing the following file failed:
‘IDMIR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 1.1.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, WARN: 1, NOTE: 2, OK: 9
Version: 0.1.1
Check: CRAN incoming feasibility
Result: WARN
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
Strong dependencies not in the CRAN or BioC software repositories:
org.Hs.eg.db
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘base’ ‘grDevices’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘org.Hs.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Qing",
family = "Fei",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 0.1.9
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xudong",
family = "Han",
role = "aut"),
person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Chonghui",
family = "Liu",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.9
Check: package dependencies
Result: ERROR
Package required but not available: ‘ChemmineR’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64
Version: 0.1.9
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 5.0Mb
Flavor: r-oldrel-macos-x86_64