Last updated on 2025-08-12 20:49:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 4.93 | 85.81 | 90.74 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 3.63 | 58.40 | 62.03 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 145.69 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 148.45 | ERROR | |||
| r-devel-windows-x86_64 | 0.11.0 | 8.00 | 177.00 | 185.00 | ERROR | |
| r-patched-linux-x86_64 | 0.11.0 | 6.86 | 81.11 | 87.97 | ERROR | |
| r-release-linux-x86_64 | 0.11.0 | 5.14 | 80.05 | 85.19 | ERROR | |
| r-release-macos-arm64 | 0.11.0 | 79.00 | OK | |||
| r-release-macos-x86_64 | 0.11.0 | 139.00 | OK | |||
| r-release-windows-x86_64 | 0.11.0 | 8.00 | 181.00 | 189.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.11.0 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.11.0 | 168.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.11.0 | 9.00 | 203.00 | 212.00 | ERROR |
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [20s/48s]
Running ‘testthat.R’ [20s/42s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project39cecd418c4024
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd21d2bd7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd737f8afe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project39cecd737f8afe
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project39cecd737f8afe
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd4b8a78e3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project39cecd6157e895
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project39cecd6157e895
Clearing cache for project: test_project39cecd6b78deae
Objects to clear from memory: xxx
Project name: test_project39cecd6b78deae
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project39cecd462734c6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd462734c6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project39cecd48c718f9
Project name: test_project39cecd1f890593
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd79cacdd3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project39cecda6e8e4b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project39cecda6e8e4b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project239cecd406e92ae is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file39cecd778b1c8a helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project39cecd3559ac24 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project39cecd45962b5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project39cecd801bad6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project39cecd4e056c8f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd4e056c8f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd1b11d683
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd1b11d683
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd6935c0a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd6935c0a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecdacea272
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd6462d06
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd6462d06
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd2f293290
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd2f293290
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd292760ae
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd292760ae
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecdd14441f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecdd14441f
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project39cecd55b94189
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd55b94189
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project39cecd67125d0e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project39cecd10fc5d46
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd11267244
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project39cecd3462314e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project3a10ae1ba384c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae42ee23eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae6bd18e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3a10ae6bd18e1
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3a10ae6bd18e1
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae1799d4e4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3a10ae290cae69
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3a10ae290cae69
Clearing cache for project: test_project3a10ae4aa6ce20
Objects to clear from memory: xxx
Project name: test_project3a10ae4aa6ce20
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3a10ae58ad2c82
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae58ad2c82
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3a10ae2a492240
Project name: test_project3a10ae54bf2b5f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae61051e2a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3a10ae76e4fb48 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3a10ae76e4fb48 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23a10ae5835e93f is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3a10ae101f2408 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3a10ae31a02d0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3a10ae57fead99
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3a10ae5c980f15
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3a10ae4578915a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae4578915a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae27082178
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae27082178
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae646fdd32
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae646fdd32
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae5972f845
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae72842279
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae72842279
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae42f7706b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae42f7706b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae5cf24bc0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae5cf24bc0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae7785f09c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae7785f09c
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3a10ae54c05025
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae54c05025
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3a10ae62d7fe3a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3a10ae1c8340f9
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae62524372
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3a10ae4356fc63
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [13s/30s]
Running ‘testthat.R’ [13s/33s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project33e31936459a12
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e319198ae8c7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e319178770eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project33e319178770eb
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project33e319178770eb
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3197c5c56ff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project33e3196acd4398
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project33e3196acd4398
Clearing cache for project: test_project33e3194208cf84
Objects to clear from memory: xxx
Project name: test_project33e3194208cf84
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project33e3196092f310
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3196092f310
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project33e3194bb3aa12
Project name: test_project33e31946f6b814
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3194a8f018c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project33e3191f637f7b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project33e3191f637f7b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project233e319563bcc08 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file33e319471d1423 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project33e3192c401be7 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project33e319642cf1e0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project33e3196c99c419
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project33e3193028215d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3193028215d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3192ba8f229
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3192ba8f229
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e319369fed38
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e319369fed38
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3194750b79f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e31967f948c2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e31967f948c2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3192a3a8c7f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3192a3a8c7f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3193221d5cf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3193221d5cf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project33e3195d5b0bb7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3195d5b0bb7
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project33e31968e26a71
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e31968e26a71
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project33e31936cf87f2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project33e31964f71e59
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3195aabb252
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project33e3195a1bcecb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project346e21121eae1b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e2125477f95
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e21722dd196
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project346e21722dd196
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project346e21722dd196
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project346e21574e20df
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project346e212594ad24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project346e212594ad24
Clearing cache for project: test_project346e211b4622d
Objects to clear from memory: xxx
Project name: test_project346e211b4622d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project346e2128431805
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e2128431805
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project346e213fd348f2
Project name: test_project346e2159a00928
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e215b0b6c0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project346e216651ee07 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project346e216651ee07 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2346e21317abafb is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file346e21728dc513 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project346e21476fbe15 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project346e215a78a330
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project346e2172132c3a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project346e2123c5e6c0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e2123c5e6c0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e21397e905f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e21397e905f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e21ef791e5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e21ef791e5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e2136042e2d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e2154089029
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e2154089029
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project346e213e8e38e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e213e8e38e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project346e21ac0afad
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e21ac0afad
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project346e212446aabf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e212446aabf
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project346e2118289bb4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e2118289bb4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project346e217b579c5c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project346e215550e0e7
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e2142d77e3d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project346e216349262d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [33s/56s]
Running ‘testthat.R’ [32s/51s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project31c0b2643b7e4d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b222ec18c8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b2796f026a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project31c0b2796f026a
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project31c0b2796f026a
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b265b85925
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project31c0b21e51a364
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project31c0b21e51a364
Clearing cache for project: test_project31c0b245d44c2e
Objects to clear from memory: xxx
Project name: test_project31c0b245d44c2e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project31c0b27379ddf8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b27379ddf8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project31c0b2508b6225
Project name: test_project31c0b23feff607
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b26e5b5401
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project31c0b232dcb0a8 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project31c0b232dcb0a8 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project231c0b26113d9aa is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file31c0b2d35aad8 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project31c0b2111f293f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project31c0b24e4afd8d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project31c0b2724135b6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project31c0b2a1fd437
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b2a1fd437
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b225207f69
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b225207f69
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b210257414
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b210257414
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b245e18756
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b26fc0a668
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b26fc0a668
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b240445ac4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b240445ac4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b26b3a3289
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b26b3a3289
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b2ea7b725
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b2ea7b725
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project31c0b24a897638
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b24a897638
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project31c0b25a533387
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project31c0b24a48c1c1
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b2fc58dc5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31c0b211be7f11
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project31e1eb12ad1dac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb315aca9c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb47850edf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project31e1eb47850edf
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project31e1eb47850edf
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb2f4e9797
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project31e1eb4691b05a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project31e1eb4691b05a
Clearing cache for project: test_project31e1ebc3bcda1
Objects to clear from memory: xxx
Project name: test_project31e1ebc3bcda1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project31e1ebe5e7d8f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1ebe5e7d8f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project31e1eb7a5a482f
Project name: test_project31e1eb2195ebe3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb7e860bd3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project31e1eb33d51a66 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project31e1eb33d51a66 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project231e1eb16fd1405 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file31e1eb744b0a2b helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project31e1eb58286dc1 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project31e1eb3695d043
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project31e1eb1e003af5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project31e1eb26ffd724
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb26ffd724
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb4bee0f18
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb4bee0f18
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb1398ebb2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb1398ebb2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb5eb5a69a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb7e4d421f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb7e4d421f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb22da781d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb22da781d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb171c3920
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb171c3920
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb51d82eef
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb51d82eef
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project31e1eb39a89af8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb39a89af8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project31e1eb43197035
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project31e1eb791af29a
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb181907
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project31e1eb2279ea12
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [33s/114s]
Running ‘testthat.R’ [33s/109s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project37729e2f6e319a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e49280da8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e68485bac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project37729e68485bac
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project37729e68485bac
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e3c7ddbea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project37729e333e35b4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project37729e333e35b4
Clearing cache for project: test_project37729e7eddeea8
Objects to clear from memory: xxx
Project name: test_project37729e7eddeea8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project37729e7d03fbaf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e7d03fbaf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project37729e2759bd2a
Project name: test_project37729e5fdf13b1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e2a27b861
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project37729e4d87f4ac is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project37729e4d87f4ac is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project237729e76a04834 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file37729e1b9640c2 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project37729e69a4d083 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project37729e4bda604a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project37729e1aeeaf58
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project37729e2a23e393
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e2a23e393
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e6ed40cbe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e6ed40cbe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e5b6308d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e5b6308d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e1c7380b7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e7247597c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e7247597c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e7462f8d5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e7462f8d5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e2ae4e1ec
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e2ae4e1ec
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e388a7ab2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e388a7ab2
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project37729e5fca9119
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e5fca9119
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project37729e51f4d2cc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project37729e53a1752a
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e7119e8c5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project37729e7a12550
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project379c391ba7a09
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c391be0ba3b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c39298e06e4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project379c39298e06e4
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project379c39298e06e4
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project379c394a5c0f34
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project379c3926f868f2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project379c3926f868f2
Clearing cache for project: test_project379c391b0fa72e
Objects to clear from memory: xxx
Project name: test_project379c391b0fa72e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project379c398e11b79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c398e11b79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project379c39b1977fd
Project name: test_project379c394fdf2efe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c39573191a5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project379c39192d7c91 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project379c39192d7c91 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2379c395d0baf2a is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file379c3935d1d3e9 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project379c39516e245e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project379c394d37f3a2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project379c39728604c8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project379c392782830b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c392782830b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c3996eb514
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c3996eb514
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c39185a3335
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c39185a3335
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c392a70fb54
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c39b0e2126
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c39b0e2126
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project379c395efc6568
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c395efc6568
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project379c391eadf933
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c391eadf933
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project379c396cca7627
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c396cca7627
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project379c3914671a57
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c3914671a57
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project379c394d5752b3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project379c3911787a32
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c396688b373
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project379c395e92206f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.11.0
Check: tests
Result: ERROR
Running 'run-all.R' [54s]
Running 'testthat.R' [54s]
Running the tests in 'tests/run-all.R' failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project28d844c67e24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d846e80268b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d846e71311
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project28d846e71311
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project28d846e71311
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project28d8441e47def
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project28d8462966756
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project28d8462966756
Clearing cache for project: test_project28d84243aa31
Objects to clear from memory: xxx
Project name: test_project28d84243aa31
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project28d848854ab7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d848854ab7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project28d846c1523e0
Project name: test_project28d8440845fa0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d8433bf20a4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project28d842b36674 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project28d842b36674 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project228d8474325cbb is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file28d84ea1787c helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project28d843ef9698 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project28d8468ad2ade
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project28d847f335db3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project28d847206196f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d847206196f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d843b162ab2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d843b162ab2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d841e074156
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d841e074156
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d8426278e7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d84a403e78
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d84a403e78
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project28d8454b367ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d8454b367ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28d84331f6160
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d84331f6160
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project28d8487165c5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d8487165c5
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project28d846f0818a2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d846f0818a2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project28d842a843f74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project28d84e6b3a6a
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d8448637b54
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28d847d1f6a6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project16334149d3cc9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1633415a15c8c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project16334187113fa
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project16334187113fa
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project16334187113fa
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project1633441234a5d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project163344ca44f1a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project163344ca44f1a
Clearing cache for project: test_project16334474915a9
Objects to clear from memory: xxx
Project name: test_project16334474915a9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project16334513272c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project16334513272c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project1633412bb48d5
Project name: test_project163341f8a629e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project163343efdee1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project163348871e35 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project163348871e35 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project216334515b2753 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file16334156832aa helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project163346d11685e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project163346bc72b48
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project1633418ef43ef
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project1633442b844c4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633442b844c4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project16334136b672d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project16334136b672d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1633452fe44ed
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633452fe44ed
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project16334432677d2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1633411176448
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633411176448
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project1633478dc5431
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633478dc5431
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1633437a69d9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633437a69d9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project163345f7c5845
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project163345f7c5845
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project163343b0b2f71
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project163343b0b2f71
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project1633455eb156a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project163342bbe2e0f
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633468f863af
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1633432ea6400
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [20s/53s]
Running ‘testthat.R’ [19s/44s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project3b2d0f362637f3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f4f077706
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f6342c64e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3b2d0f6342c64e
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3b2d0f6342c64e
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f42f7662a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3b2d0f7ffc3bde
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3b2d0f7ffc3bde
Clearing cache for project: test_project3b2d0f577a6753
Objects to clear from memory: xxx
Project name: test_project3b2d0f577a6753
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3b2d0f180071e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f180071e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3b2d0f445c561c
Project name: test_project3b2d0f4d4afcb2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f67d1fe5c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3b2d0f495985ab is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3b2d0f495985ab is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23b2d0f5e708d1d is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3b2d0f40dffadc helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3b2d0f284026ab is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3b2d0f7cbdee
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3b2d0f2e48be84
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3b2d0f7bf0de77
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f7bf0de77
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f4365163d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f4365163d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f2c401eff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f2c401eff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f62ab220a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f5ccc0b36
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f5ccc0b36
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f2eb0bc08
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f2eb0bc08
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f265e90ac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f265e90ac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f23dbbfcd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f23dbbfcd
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3b2d0f3fd52945
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f3fd52945
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3b2d0f50f16c9c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3b2d0f7a3a95b8
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f289456db
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b2d0f61e27d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project3b77e7be69080
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e7200244b7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e72c50cc70
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3b77e72c50cc70
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3b77e72c50cc70
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e757bd52a5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3b77e7435166f3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3b77e7435166f3
Clearing cache for project: test_project3b77e719bc1a7b
Objects to clear from memory: xxx
Project name: test_project3b77e719bc1a7b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3b77e74821b1e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e74821b1e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3b77e7b5d4f0e
Project name: test_project3b77e760703821
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e72962b3bb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3b77e71a1edb0 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3b77e71a1edb0 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23b77e717b044a7 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3b77e7596e2907 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3b77e724c23aa4 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3b77e7c3263c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3b77e711bf0d6f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3b77e710bfec7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e710bfec7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e7d31e5d7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e7d31e5d7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e751a30903
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e751a30903
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e711462fab
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e725d56d51
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e725d56d51
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e765982b41
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e765982b41
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e74abcb919
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e74abcb919
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e7391dcd34
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e7391dcd34
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3b77e713d614e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e713d614e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3b77e73e65e803
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3b77e71e06b12
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e73bb3ed63
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3b77e731da73eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [19s/49s]
Running ‘testthat.R’ [19s/42s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project25e54c1bc91778
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c2ec894d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c3dad29ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project25e54c3dad29ba
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project25e54c3dad29ba
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c31fa21b3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project25e54c3725dab0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project25e54c3725dab0
Clearing cache for project: test_project25e54c35c36fef
Objects to clear from memory: xxx
Project name: test_project25e54c35c36fef
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project25e54c6be1948
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c6be1948
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project25e54c5a14b7e8
Project name: test_project25e54c6154aa28
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54ccc165f2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project25e54c48cf571 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project25e54c48cf571 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project225e54c66dddcdf is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file25e54c1a75db45 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project25e54c329a3438 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project25e54c6197c0c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project25e54c6211771e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project25e54c379d6848
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c379d6848
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c7ebcaf82
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c7ebcaf82
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c38fbc061
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c38fbc061
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c5a6c968a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c26cd70df
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c26cd70df
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c6ed8e8ff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c6ed8e8ff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54ceb8780d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54ceb8780d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c7c6f56ac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c7c6f56ac
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project25e54c7a18e853
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c7a18e853
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project25e54c5aeddefe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project25e54c7a45c42e
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c71436277
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project25e54c5f6d758b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project2633e47498f879
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e442d5f638
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e41e60aa63
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2633e41e60aa63
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project2633e41e60aa63
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e4112f6f23
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project2633e423b788
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project2633e423b788
Clearing cache for project: test_project2633e44f2771b4
Objects to clear from memory: xxx
Project name: test_project2633e44f2771b4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project2633e44fa70f07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e44fa70f07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2633e418c2e03f
Project name: test_project2633e43c7ba6e8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e45cddb3e9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project2633e478870b27 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2633e478870b27 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project22633e44d0621d8 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file2633e41ca72ac8 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project2633e413ceb624 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project2633e426f0ec49
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project2633e448a51614
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project2633e433ebd5cd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e433ebd5cd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e467fcfa1f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e467fcfa1f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e47af1b6b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e47af1b6b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e46f966c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e414de1c50
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e414de1c50
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e4340ac53a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e4340ac53a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e4620c7407
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e4620c7407
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e451aa59d2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e451aa59d2
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project2633e439ba7627
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e439ba7627
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project2633e46fa5cbe8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project2633e44475fc79
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e41c748c1c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2633e429b230a7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'run-all.R' [54s]
Running 'testthat.R' [55s]
Running the tests in 'tests/run-all.R' failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project1538873863738
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project153886806a02
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project15388270b3eb2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project15388270b3eb2
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project15388270b3eb2
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project153881202e2a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project1538819cc73eb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project1538819cc73eb
Clearing cache for project: test_project1538827071700
Objects to clear from memory: xxx
Project name: test_project1538827071700
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project15388268035ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project15388268035ea
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project15388605a1a0d
Project name: test_project1538878c6706c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project15388259224c3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project1538842c67a41 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project1538842c67a41 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2153887f4e678e is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file153882c5961f2 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project153883ec878c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project1538837317a03
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project1538826e75667
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project153883f841169
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project153883f841169
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1538832ea5453
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1538832ea5453
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project153886ff93b54
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project153886ff93b54
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project153882fb77f75
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project1538861fdfc3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1538861fdfc3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project1538846f1629b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project1538846f1629b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project15388753623b1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project15388753623b1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project153883c776bfe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project153883c776bfe
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project153881fd96a3d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project153881fd96a3d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project153884376694a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project153883ee511d6
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project15388539765ca
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project153886610283c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project2d42436357aa7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42449ff5842
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d4241b633150
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2d4241b633150
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project2d4241b633150
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42459d25f32
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project2d42414856faf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project2d42414856faf
Clearing cache for project: test_project2d42414b43b9f
Objects to clear from memory: xxx
Project name: test_project2d42414b43b9f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project2d42448c92c35
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42448c92c35
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2d4243ac06378
Project name: test_project2d4241abeb08
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42481c3e2a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project2d4245c112f25 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2d4245c112f25 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project22d42429251949 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file2d4246e4b33cb helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project2d42436c8a78 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project2d424216b3fa6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project2d42462cb2278
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project2d42441eccd4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42441eccd4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d4247782790
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d4247782790
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42470653f79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42470653f79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d4243fb67f0d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d424135a74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d424135a74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42410ef5fb4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42410ef5fb4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2d424795220f0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d424795220f0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42462597bee
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42462597bee
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project2d42437252f3a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d42437252f3a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project2d424698630c8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project2d4242e657fed
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d424373e5a19
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2d4245847545f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'run-all.R' [62s]
Running 'testthat.R' [62s]
Running the tests in 'tests/run-all.R' failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_projectc210417ba52
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc21038761110
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc210b56cb3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_projectc210b56cb3
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_projectc210b56cb3
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_projectc21070a14ebe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_projectc21022646598
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_projectc21022646598
Clearing cache for project: test_projectc2105697ce2
Objects to clear from memory: xxx
Project name: test_projectc2105697ce2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_projectc2103db44d3c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2103db44d3c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_projectc21020756f41
Project name: test_projectc210677c7dff
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc210147a5bee
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_projectc2102749228c is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_projectc2102749228c is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2c2104a41916 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config filec21060de777a helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_projectc2102fae309c is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_projectc21065d230bd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_projectc2106cb612e8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_projectc2106167153c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2106167153c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc2104c092d6e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2104c092d6e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc210433f4f24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc210433f4f24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc2106bcb56fe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc210694b27d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc210694b27d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_projectc210586c695a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc210586c695a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_projectc210d111da1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc210d111da1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_projectc2102c49528
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2102c49528
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_projectc2106bb94e78
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2106bb94e78
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_projectc2103ecb6ed9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_projectc21072541bd3
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc2105cb57c9e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_projectc21033fb6b1a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project2481c23f64c13
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c776a53b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c7aecf94
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2481c7aecf94
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project2481c7aecf94
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c4b915ca0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project2481c5be45105
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project2481c5be45105
Clearing cache for project: test_project2481c30d7fbd
Objects to clear from memory: xxx
Project name: test_project2481c30d7fbd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project2481c34405b38
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c34405b38
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2481c4894693a
Project name: test_project2481c42d36c1f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c750d5faf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project2481c5c8f27e5 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2481c5c8f27e5 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project22481c664b2995 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file2481c8cb1cd5 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project2481c10ee2abc is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project2481c209d5575
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project2481c572b519a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project2481c4a81400
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c4a81400
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c5d33423b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c5d33423b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c659bc9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c659bc9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c19224d75
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c5123661f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c5123661f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c2da871c7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c2da871c7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c49ee2cd7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c49ee2cd7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c19b82a18
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c19b82a18
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project2481c1d454123
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c1d454123
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project2481c7532d6b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project2481c6d254bc5
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c400e5739
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2481c60225d7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64