Last updated on 2025-09-03 20:49:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.3.1 | 17.59 | 401.13 | 418.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 4.3.1 | 11.45 | 272.76 | 284.21 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 4.3.1 | 708.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 4.3.1 | 657.49 | OK | |||
| r-devel-windows-x86_64 | 4.3.1 | 23.00 | 373.00 | 396.00 | OK | |
| r-patched-linux-x86_64 | 4.3.1 | 16.47 | 389.45 | 405.92 | OK | |
| r-release-linux-x86_64 | 4.3.1 | 16.57 | 385.37 | 401.94 | OK | |
| r-release-macos-arm64 | 4.3.1 | 132.00 | OK | |||
| r-release-macos-x86_64 | 4.3.1 | 305.00 | OK | |||
| r-release-windows-x86_64 | 4.3.1 | 23.00 | 377.00 | 400.00 | OK | |
| r-oldrel-macos-arm64 | 4.3.1 | 138.00 | OK | |||
| r-oldrel-macos-x86_64 | 4.3.1 | 322.00 | OK | |||
| r-oldrel-windows-x86_64 | 4.3.1 | 28.00 | 503.00 | 531.00 | OK |
Version: 4.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [132s/164s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OlinkAnalyze)
>
> test_check("OlinkAnalyze")
Variables and covariates converted from character to factors: Site
ANOVA model fit to each assay: NPX~Site
Variables and covariates converted from character to factors: Time
ANOVA model fit to each assay: NPX~Time
Variables and covariates converted from character to factors: Site, Time
ANOVA model fit to each assay: NPX~Site*Time
Variables and covariates converted from character to factors: Site
Means estimated for each assay from ANOVA model: NPX~Site
Variables and covariates converted from character to factors: Time
Means estimated for each assay from ANOVA model: NPX~Time
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment2
ANOVA model fit to each assay: NPX~treatment2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment1
ANOVA model fit to each assay: NPX~treatment1
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment2
Means estimated for each assay from ANOVA model: NPX~treatment2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment2
Means estimated for each assay from ANOVA model: NPX~treatment2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Using max LOD as filter criteria...
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Using plate LOD as filter criteria...
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Using plate LOD as filter criteria...
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Using plate LOD as filter criteria...
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
0 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Samples removed due to missing variable CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables converted from character to factors: Site
Kruskal model fit to each assay: NPX~Site
Samples removed due to missing variable CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables converted from character to factors: Time
Friedman model fit to each assay: NPX~Time
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Samples removed due to missing variable: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables converted from character to factors: Site
Pairwise comparisons for Kruskal-Wallis test using Dunn test were performed
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Samples removed due to missing variable: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables converted from character to factors: Time
Pairwise comparisons for Friedman test using paired Wilcoxon signed-rank test were performed
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables converted from character to factors: treatment2
Kruskal model fit to each assay: NPX~treatment2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables converted from character to factors: treatment2
Pairwise comparisons for Kruskal-Wallis test using Dunn test were performed
Samples removed due to missing variable or covariate levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables and covariates converted from character to factors: Treatment, Time
ANOVA model fit to each assay: NPX~Treatment*Time
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Samples removed due to missing variable or covariate levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variables and covariates converted from character to factors: Treatment, Time
Means estimated for each assay from ANOVA model: NPX~Treatment*Time
NOTE: Results may be misleading due to involvement in interactions
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment2
ANOVA model fit to each assay: NPX~treatment2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Variables and covariates converted from character to factors: treatment2
Means estimated for each assay from ANOVA model: NPX~treatment2
Random assignment of SAMPLES to plates
Assigning subjects to plates
.
Random assignment of SUBJECTS to plates
`study` column detected in manifest. Optional study argument is set to "study".
Assigning subjects to plates. Keeping studies together during randomization.
Testing with 0 empty well(s) in the plate.
.
study1 successful!
Testing with 0 empty well(s) in the plate.
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Testing with 1 empty well(s) in the plate.
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Testing with 2 empty well(s) in the plate.
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Testing with 3 empty well(s) in the plate.
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Testing with 4 empty well(s) in the plate.
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study2 successful!
Random assignment of SUBJECTS to plates
Totally included 4 empty well(s) in first and/or intermediate plate(s) to accomplish the randomization.
Please try another seed or increase the number of iterations if there are indications that another randomization might leave fewer empty wells.
`study` column detected in manifest. Optional study argument is set to "study".
Assigning subjects to plates. Multi-study project detected.
Studies will be kept together during randomization.
Random assignment of SAMPLES to plates by study
Assigning subjects to plates
.
Random assignment of SUBJECTS to plates
Random assignment of SAMPLES to plates
Samples removed due to missing variable levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variable converted from character to factor: Treatment
T-test is performed on Treated - Untreated.
Variable converted from character to factor: Time
Paired t-test is performed on Baseline - Week.6.
Samples removed due to missing variable levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variable converted from character to factor: Time
Variable converted from character to factor: treatment1
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
T-test is performed on control - treated.
Target 96 data in wide form detected.
Multiple quantification columns detected (NPX, PCNormalizedNPX, Count). NPX will be used for downstream analysis.
QUANT data detected. Some downstream functions may not be supported.
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
326 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
0 assay(s) exhibited assay QC warning. For more information see the AssayQC column.
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Bridge normalization will be performed!
Assay(s) from the following input dataset have been excluded from normalization:
* 20200001: OID01216 and OID01217
i Were marked as "EXCLUDED".
Bridge normalization will be performed!
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
Duplicate SampleID(s) detected:
CONTROL_SAMPLE_AS 1
CONTROL_SAMPLE_AS 2
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Samples removed due to missing variable levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variable converted from character to factor: Treatment
Mann-Whitney U Test is performed on Treated - Untreated.
Variable converted from character to factor: Time
Paired Mann-Whitney U Test is performed on Baseline - Week.6.
Samples removed due to missing variable levels: CONTROL_SAMPLE_AS 1, CONTROL_SAMPLE_AS 2
Variable converted from character to factor: Time
Variable converted from character to factor: treatment1
8 assay(s) exhibited assay QC warning. For more information see the Assay_Warning column.
Mann-Whitney U Test is performed on control - treated.
[ FAIL 2 | WARN 0 | SKIP 38 | PASS 520 ]
══ Skipped tests (38) ══════════════════════════════════════════════════════════
• On CRAN (13): 'test-Olink_boxplot.R:1:1',
'test-Olink_plate_randomizer.R:60:3', 'test-Read_NPX_data.R:52:5',
'test-Volcano_plot.R:17:3', 'test-dist_plot.R:18:5',
'test-linear_mixed_model.R:1:1', 'test-npxProcessing.R:150:3',
'test-olink_Pathway_Enrichment.R:1:1', 'test-olink_Pathway_Heatmap.R:1:1',
'test-olink_Pathway_Visualization.R:1:1',
'test-olink_bridgeability_plot.R:59:5', 'test-olink_qc_plot.R:16:5',
'test-pca_plot.R:2:1'
• file.exists(test_path("data", "example_3k_data.rds")) is not TRUE (21):
'test-olink_normalization.R:450:5', 'test-olink_normalization.R:496:5',
'test-olink_normalization.R:770:5', 'test-olink_normalization.R:835:5',
'test-olink_normalization.R:890:5', 'test-olink_normalization_product.R:7:5',
'test-olink_normalization_product.R:129:5',
'test-olink_normalization_product.R:333:5',
'test-olink_normalization_product.R:464:5',
'test-olink_normalization_product.R:593:5',
'test-olink_normalization_product.R:663:5',
'test-olink_normalization_product.R:837:5',
'test-olink_normalization_utils.R:327:5',
'test-olink_normalization_utils.R:3245:5',
'test-olink_normalization_utils.R:3376:5',
'test-olink_normalization_utils.R:3530:5',
'test-olink_normalization_utils.R:3621:5',
'test-olink_normalization_utils.R:3670:5',
'test-olink_normalization_utils.R:3845:5',
'test-olink_normalization_utils.R:4891:5',
'test-olink_normalization_utils.R:6336:5'
• file.exists(test_path("data", "ref_results_norm.rds")) is not TRUE (4):
'test-olink_normalization.R:17:5', 'test-olink_normalization.R:125:5',
'test-olink_normalization.R:237:5', 'test-olink_normalization.R:349:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_Olink_wilcox.R:16:3'): Wilcox-test function works ────────────
`wilcox.test_results` (`actual`) not equal to ref_results$wilcox.test_results (`expected`).
actual vs expected
Assay OlinkID UniProt estimate statistic conf.low conf.high
actual[69, ] CST3 OID01225 P01034 -0.875682612 2629 -2.25015203 0.388533359
actual[70, ] MCP-2 OID00549 P80075 0.970410901 3374 -0.52193963 2.498788045
actual[71, ] PLA2G7 OID01283 Q13093 -0.561726940 2634 -1.37648396 0.258808264
- actual[72, ] IL-10RB OID00515 Q08334 0.932962700 3368 -0.43475845 2.248641802
+ expected[72, ] CCL20 OID00556 P78556 -0.196107016 2635 -0.43918211 0.133187642
- actual[73, ] CCL20 OID00556 P78556 -0.196107016 2635 -0.43918211 0.133187642
+ expected[73, ] IL-10RB OID00515 Q08334 0.932962700 3368 -0.43475845 2.248641802
actual[74, ] FGF-19 OID00545 O95750 -0.499247293 2643 -1.26312705 0.280227921
actual[75, ] STAMPB OID00558 O95630 -0.210144979 2648 -0.54986280 0.122325673
actual[76, ] FETUB OID01305 Q9UGM5 0.331535011 3344 -0.19389290 0.872140441
actual vs expected
Assay OlinkID UniProt estimate statistic conf.low conf.high
actual[98, ] CRTAC1 OID01304 Q9NQ79 0.561682663 3282 -0.59127993 1.756491881
actual[99, ] IL-18R1 OID00517 Q13478 0.423794620 3281 -0.43032393 1.248417443
actual[100, ] IL-2RB OID00492 P14784 -0.414333610 2729 -1.21507349 0.444861500
- actual[101, ] UMOD OID01237 P07911 -0.637589280 2735 -2.00365547 0.643058192
+ expected[101, ] TIE1 OID01270 P35590 0.563960466 3268 -0.57217094 1.702447022
- actual[102, ] TIE1 OID01270 P35590 0.563960466 3268 -0.57217094 1.702447022
+ expected[102, ] UMOD OID01237 P07911 -0.637589280 2735 -2.00365547 0.643058192
actual[103, ] 4E-BP1 OID00536 Q13541 0.191689520 3254 -0.23506749 0.632327950
actual[104, ] DNER OID01213 Q8NFT8 -0.497470652 2752 -1.65102621 0.560377858
- actual[105, ] IL13 OID00525 P35225 0.335115651 3248 -0.42974996 1.077306202
+ expected[105, ] HGF OID00522 P14210 -0.309173007 2755 -0.98003147 0.422194002
- actual[106, ] HGF OID00522 P14210 -0.309173007 2755 -0.98003147 0.422194002
+ expected[106, ] IL13 OID00525 P35225 0.335115651 3248 -0.42974996 1.077306202
actual[107, ] TIMD4 OID01298 Q96H15 -0.476226181 2759 -1.48192555 0.501644037
and 2 more ...
actual vs expected
Assay OlinkID UniProt estimate statistic conf.low conf.high
actual[117, ] CST5 OID00491 P28325 -0.321188019 2792 -1.36073784 0.646820108
actual[118, ] EN-RAGE OID00541 P80511 -0.652559177 2794 -2.29475463 0.980840940
actual[119, ] MCP-3 OID00474 P80098 0.335478468 3209 -0.60924217 1.335485327
- actual[120, ] TNXB OID01260 P22105 -0.355311362 2809 -1.42092035 0.725548598
+ expected[120, ] CD59 OID01248 P13987 0.185237720 3194 -0.39264306 0.698592605
- actual[121, ] CD59 OID01248 P13987 0.185237720 3194 -0.39264306 0.698592605
+ expected[121, ] TNXB OID01260 P22105 -0.355311362 2809 -1.42092035 0.725548598
actual[122, ] SELL OID01249 P14151 -0.406425928 2816 -1.63743712 0.815033469
actual[123, ] FCN2 OID01290 Q15485 0.488781358 3185 -0.85751767 1.767147233
actual[124, ] CSF-1 OID00562 P09603 -0.131822711 2825 -0.59938743 0.336666671
actual$Assay | expected$Assay
[69] "CST3" | "CST3" [69]
[70] "MCP-2" | "MCP-2" [70]
[71] "PLA2G7" | "PLA2G7" [71]
[72] "IL-10RB" - "CCL20" [72]
[73] "CCL20" - "IL-10RB" [73]
[74] "FGF-19" | "FGF-19" [74]
[75] "STAMPB" | "STAMPB" [75]
[76] "FETUB" | "FETUB" [76]
actual$Assay | expected$Assay
[98] "CRTAC1" | "CRTAC1" [98]
[99] "IL-18R1" | "IL-18R1" [99]
[100] "IL-2RB" | "IL-2RB" [100]
[101] "UMOD" - "TIE1" [101]
[102] "TIE1" - "UMOD" [102]
[103] "4E-BP1" | "4E-BP1" [103]
[104] "DNER" | "DNER" [104]
[105] "IL13" - "HGF" [105]
[106] "HGF" - "IL13" [106]
[107] "TIMD4" | "TIMD4" [107]
... ... ... and 2 more ...
actual$Assay | expected$Assay
[117] "CST5" | "CST5" [117]
[118] "EN-RAGE" | "EN-RAGE" [118]
[119] "MCP-3" | "MCP-3" [119]
[120] "TNXB" - "CD59" [120]
[121] "CD59" - "TNXB" [121]
[122] "SELL" | "SELL" [122]
[123] "FCN2" | "FCN2" [123]
[124] "CSF-1" | "CSF-1" [124]
actual$OlinkID | expected$OlinkID
[69] "OID01225" | "OID01225" [69]
[70] "OID00549" | "OID00549" [70]
[71] "OID01283" | "OID01283" [71]
[72] "OID00515" - "OID00556" [72]
[73] "OID00556" - "OID00515" [73]
[74] "OID00545" | "OID00545" [74]
[75] "OID00558" | "OID00558" [75]
[76] "OID01305" | "OID01305" [76]
actual$OlinkID | expected$OlinkID
[98] "OID01304" | "OID01304" [98]
[99] "OID00517" | "OID00517" [99]
[100] "OID00492" | "OID00492" [100]
[101] "OID01237" - "OID01270" [101]
[102] "OID01270" - "OID01237" [102]
[103] "OID00536" | "OID00536" [103]
[104] "OID01213" | "OID01213" [104]
[105] "OID00525" - "OID00522" [105]
[106] "OID00522" - "OID00525" [106]
[107] "OID01298" | "OID01298" [107]
... ... ... and 2 more ...
actual$OlinkID | expected$OlinkID
[117] "OID00491" | "OID00491" [117]
[118] "OID00541" | "OID00541" [118]
[119] "OID00474" | "OID00474" [119]
[120] "OID01260" - "OID01248" [120]
[121] "OID01248" - "OID01260" [121]
[122] "OID01249" | "OID01249" [122]
[123] "OID01290" | "OID01290" [123]
[124] "OID00562" | "OID00562" [124]
actual$UniProt | expected$UniProt
[69] "P01034" | "P01034" [69]
[70] "P80075" | "P80075" [70]
[71] "Q13093" | "Q13093" [71]
[72] "Q08334" - "P78556" [72]
[73] "P78556" - "Q08334" [73]
[74] "O95750" | "O95750" [74]
[75] "O95630" | "O95630" [75]
[76] "Q9UGM5" | "Q9UGM5" [76]
actual$UniProt | expected$UniProt
[98] "Q9NQ79" | "Q9NQ79" [98]
[99] "Q13478" | "Q13478" [99]
[100] "P14784" | "P14784" [100]
[101] "P07911" - "P35590" [101]
[102] "P35590" - "P07911" [102]
[103] "Q13541" | "Q13541" [103]
[104] "Q8NFT8" | "Q8NFT8" [104]
[105] "P35225" - "P14210" [105]
[106] "P14210" - "P35225" [106]
[107] "Q96H15" | "Q96H15" [107]
... ... ... and 2 more ...
actual$UniProt | expected$UniProt
[117] "P28325" | "P28325" [117]
[118] "P80511" | "P80511" [118]
[119] "P80098" | "P80098" [119]
[120] "P22105" - "P13987" [120]
[121] "P13987" - "P22105" [121]
[122] "P14151" | "P14151" [122]
[123] "Q15485" | "Q15485" [123]
[124] "P09603" | "P09603" [124]
`actual$estimate[69:76]`: -0.88 0.97 -0.56 0.93 -0.20 -0.50 -0.21 0.33
`expected$estimate[69:76]`: -0.88 0.97 -0.56 -0.20 0.93 -0.50 -0.21 0.33
actual$estimate | expected$estimate
[98] 0.56 | 0.56 [98]
[99] 0.42 | 0.42 [99]
[100] -0.41 | -0.41 [100]
[101] -0.64 - 0.56 [101]
[102] 0.56 - -0.64 [102]
[103] 0.19 | 0.19 [103]
[104] -0.50 | -0.50 [104]
[105] 0.34 - -0.31 [105]
[106] -0.31 - 0.34 [106]
[107] -0.48 | -0.48 [107]
... ... ... and 2 more ...
`actual$estimate[117:124]`: -0.32 -0.65 0.34 -0.36 0.19 -0.41 0.49 -0.13
`expected$estimate[117:124]`: -0.32 -0.65 0.34 0.19 -0.36 -0.41 0.49 -0.13
actual$statistic | expected$statistic
[69] 2629.0 | 2629.0 [69]
[70] 3374.0 | 3374.0 [70]
[71] 2634.0 | 2634.0 [71]
[72] 3368.0 - 2635.0 [72]
[73] 2635.0 - 3368.0 [73]
[74] 2643.0 | 2643.0 [74]
[75] 2648.0 | 2648.0 [75]
[76] 3344.0 | 3344.0 [76]
actual$statistic | expected$statistic
[98] 3282.0 | 3282.0 [98]
[99] 3281.0 | 3281.0 [99]
[100] 2729.0 | 2729.0 [100]
[101] 2735.0 - 3268.0 [101]
[102] 3268.0 - 2735.0 [102]
[103] 3254.0 | 3254.0 [103]
[104] 2752.0 | 2752.0 [104]
[105] 3248.0 - 2755.0 [105]
[106] 2755.0 - 3248.0 [106]
[107] 2759.0 | 2759.0 [107]
... ... ... and 2 more ...
actual$statistic | expected$statistic
[117] 2792.0 | 2792.0 [117]
[118] 2794.0 | 2794.0 [118]
[119] 3209.0 | 3209.0 [119]
[120] 2809.0 - 3194.0 [120]
[121] 3194.0 - 2809.0 [121]
[122] 2816.0 | 2816.0 [122]
[123] 3185.0 | 3185.0 [123]
[124] 2825.0 | 2825.0 [124]
actual$conf.low | expected$conf.low
[69] -2.2502 | -2.2502 [69]
[70] -0.5219 | -0.5219 [70]
[71] -1.3765 | -1.3765 [71]
[72] -0.4348 - -0.4392 [72]
[73] -0.4392 - -0.4348 [73]
[74] -1.2631 | -1.2631 [74]
[75] -0.5499 | -0.5499 [75]
[76] -0.1939 | -0.1939 [76]
actual$conf.low | expected$conf.low
[98] -0.5913 | -0.5913 [98]
[99] -0.4303 | -0.4303 [99]
[100] -1.2151 | -1.2151 [100]
[101] -2.0037 - -0.5722 [101]
[102] -0.5722 - -2.0037 [102]
[103] -0.2351 | -0.2351 [103]
[104] -1.6510 | -1.6510 [104]
[105] -0.4297 - -0.9800 [105]
[106] -0.9800 - -0.4297 [106]
[107] -1.4819 | -1.4819 [107]
... ... ... and 2 more ...
actual$conf.low | expected$conf.low
[117] -1.3607 | -1.3607 [117]
[118] -2.2948 | -2.2948 [118]
[119] -0.6092 | -0.6092 [119]
[120] -1.4209 - -0.3926 [120]
[121] -0.3926 - -1.4209 [121]
[122] -1.6374 | -1.6374 [122]
[123] -0.8575 | -0.8575 [123]
[124] -0.5994 | -0.5994 [124]
`actual$conf.high[69:76]`: 0.389 2.499 0.259 2.249 0.133 0.280 0.122 0.872
`expected$conf.high[69:76]`: 0.389 2.499 0.259 0.133 2.249 0.280 0.122 0.872
actual$conf.high | expected$conf.high
[98] 1.756 | 1.756 [98]
[99] 1.248 | 1.248 [99]
[100] 0.445 | 0.445 [100]
[101] 0.643 - 1.702 [101]
[102] 1.702 - 0.643 [102]
[103] 0.632 | 0.632 [103]
[104] 0.560 | 0.560 [104]
[105] 1.077 - 0.422 [105]
[106] 0.422 - 1.077 [106]
[107] 0.502 | 0.502 [107]
... ... ... and 2 more ...
`actual$conf.high[117:124]`: 0.647 0.981 1.335 0.726 0.699 0.815 1.767 0.337
`expected$conf.high[117:124]`: 0.647 0.981 1.335 0.699 0.726 0.815 1.767 0.337
── Failure ('test_Olink_wilcox.R:17:3'): Wilcox-test function works ────────────
as.matrix(wilcox.test_results_paired) (`actual`) not equal to as.matrix(ref_results$wilcox.test_results_paired) (`expected`).
actual | expected
[13] "REG3A" | "REG3A" [13]
[14] "IL-10RB" | "IL-10RB" [14]
[15] "SELL" | "SELL" [15]
[16] "TNC" - "MEGF9" [16]
[17] "MEGF9" - "TNC" [17]
[18] "CCL11" | "CCL11" [18]
[19] "TIMD4" | "TIMD4" [19]
[20] "CASP-8" | "CASP-8" [20]
[21] "STAMPB" | "STAMPB" [21]
[22] "LYVE1" - "CST5" [22]
... ... ... and 5 more ...
actual | expected
[28] "NT-3" | "NT-3" [28]
[29] "IL-20" | "IL-20" [29]
[30] "C2" | "C2" [30]
[31] "IL-20RA" - "COMP" [31]
[32] "COMP" - "IL-20RA" [32]
[33] "FCN2" | "FCN2" [33]
[34] "IL-17C" | "IL-17C" [34]
[35] "PRCP" | "PRCP" [35]
[36] "SCF" | "SCF" [36]
[37] "DNER" | "DNER" [37]
... ... ... and 5 more ...
actual | expected
[45] "PROC" | "PROC" [45]
[46] "OSMR" | "OSMR" [46]
[47] "CD46" | "CD46" [47]
[48] "CXCL5" - "CDH1" [48]
[49] "CDH1" - "CXCL5" [49]
[50] "MFAP5" | "MFAP5" [50]
[51] "SIRT2" - "4E-BP1" [51]
[52] "4E-BP1" - "SIRT2" [52]
[53] "PLTP" - "CES1" [53]
[54] "CES1" - "PLTP" [54]
... ... ... and 8 more ...
actual | expected
[77] "CCL5" | "CCL5" [77]
[78] "CCL28" | "CCL28" [78]
[79] "TNFB" | "TNFB" [79]
[80] "uPA" - "TGFBI" [80]
[81] "TGFBI" - "uPA" [81]
[82] "KIT" | "KIT" [82]
[83] "ANGPTL3" | "ANGPTL3" [83]
[84] "TIMP1" - "CXCL10" [84]
[85] "TNFRSF9" - "TIMP1" [85]
[86] "CXCL10" - "TNFRSF9" [86]
... ... ... and 3 more ...
actual | expected
[112] "CA1" | "CA1" [112]
[113] "IFN-gamma" | "IFN-gamma" [113]
[114] "PCOLCE" | "PCOLCE" [114]
[115] "CSF-1" - "CRTAC1" [115]
[116] "CRTAC1" - "CSF-1" [116]
[117] "IL10" | "IL10" [117]
[118] "CD5" | "CD5" [118]
[119] "IL-10RA" | "IL-10RA" [119]
actual | expected
[197] "OID01280" | "OID01280" [197]
[198] "OID00515" | "OID00515" [198]
[199] "OID01249" | "OID01249" [199]
[200] "OID01265" - "OID01303" [200]
[201] "OID01303" - "OID01265" [201]
[202] "OID00505" | "OID00505" [202]
[203] "OID01298" | "OID01298" [203]
[204] "OID00550" | "OID00550" [204]
[205] "OID00558" | "OID00558" [205]
[206] "OID01307" - "OID00491" [206]
... ... ... and 5 more ...
actual | expected
[212] "OID00554" | "OID00554" [212]
[213] "OID00537" | "OID00537" [213]
[214] "OID01233" | "OID01233" [214]
[215] "OID00489" - "OID01274" [215]
[216] "OID01274" - "OID00489" [216]
[217] "OID01290" | "OID01290" [217]
[218] "OID00483" | "OID00483" [218]
[219] "OID01272" | "OID01272" [219]
[220] "OID00500" | "OID00500" [220]
[221] "OID01213" | "OID01213" [221]
... ... ... and 5 more ...
actual | expected
[229] "OID01228" | "OID01228" [229]
[230] "OID01300" | "OID01300" [230]
[231] "OID01251" | "OID01251" [231]
[232] "OID00520" - "OID01245" [232]
[233] "OID01245" - "OID00520" [233]
[234] "OID01285" | "OID01285" [234]
[235] "OID00538" - "OID00536" [235]
[236] "OID00536" - "OID00538" [236]
[237] "OID01275" - "OID01263" [237]
[238] "OID01263" - "OID01275" [238]
... ... ... and 8 more ...
actual | expected
[261] "OID01246" | "OID01246" [261]
[262] "OID00539" | "OID00539" [262]
[263] "OID00561" | "OID00561" [263]
[264] "OID00481" - "OID01291" [264]
[265] "OID01291" - "OID00481" [265]
[266] "OID01241" | "OID01241" [266]
[267] "OID01306" | "OID01306" [267]
[268] "OID01224" - "OID00535" [268]
[269] "OID00553" - "OID01224" [269]
[270] "OID00535" - "OID00553" [270]
... ... ... and 3 more ...
actual | expected
[296] "OID01223" | "OID01223" [296]
[297] "OID00544" | "OID00544" [297]
[298] "OID01289" | "OID01289" [298]
[299] "OID00562" - "OID01304" [299]
[300] "OID01304" - "OID00562" [300]
[301] "OID00528" | "OID00528" [301]
[302] "OID00531" | "OID00531" [302]
[303] "OID00508" | "OID00508" [303]
actual | expected
[381] "Q06141" | "Q06141" [381]
[382] "Q08334" | "Q08334" [382]
[383] "P14151" | "P14151" [383]
[384] "P24821" - "Q9H1U4" [384]
[385] "Q9H1U4" - "P24821" [385]
[386] "P51671" | "P51671" [386]
[387] "Q96H15" | "Q96H15" [387]
[388] "Q14790" | "Q14790" [388]
[389] "O95630" | "O95630" [389]
[390] "Q9Y5Y7" - "P28325" [390]
... ... ... and 5 more ...
actual | expected
[396] "P20783" | "P20783" [396]
[397] "Q9NYY1" | "Q9NYY1" [397]
[398] "P06681" | "P06681" [398]
[399] "Q9UHF4" - "P49747" [399]
[400] "P49747" - "Q9UHF4" [400]
[401] "Q15485" | "Q15485" [401]
[402] "Q9P0M4" | "Q9P0M4" [402]
[403] "P42785" | "P42785" [403]
[404] "P21583" | "P21583" [404]
[405] "Q8NFT8" | "Q8NFT8" [405]
... ... ... and 5 more ...
actual | expected
[413] "P04070" | "P04070" [413]
[414] "Q99650" | "Q99650" [414]
[415] "P15529" | "P15529" [415]
[416] "P42830" - "P12830" [416]
[417] "P12830" - "P42830" [417]
[418] "Q13361" | "Q13361" [418]
[419] "Q8IXJ6" - "Q13541" [419]
[420] "Q13541" - "Q8IXJ6" [420]
[421] "P55058" - "P23141" [421]
[422] "P23141" - "P55058" [422]
... ... ... and 8 more ...
actual | expected
[445] "P13501" | "P13501" [445]
[446] "Q9NRJ3" | "Q9NRJ3" [446]
[447] "P01374" | "P01374" [447]
[448] "P00749" - "Q15582" [448]
[449] "Q15582" - "P00749" [449]
[450] "P10721" | "P10721" [450]
[451] "Q9Y5C1" | "Q9Y5C1" [451]
[452] "P01033" - "P02778" [452]
[453] "Q07011" - "P01033" [453]
[454] "P02778" - "Q07011" [454]
... ... ... and 3 more ...
actual | expected
[480] "P00915" | "P00915" [480]
[481] "P01579" | "P01579" [481]
[482] "Q15113" | "Q15113" [482]
[483] "P09603" - "Q9NQ79" [483]
[484] "Q9NQ79" - "P09603" [484]
[485] "P22301" | "P22301" [485]
[486] "P06127" | "P06127" [486]
[487] "Q13651" | "Q13651" [487]
actual | expected
[571] "Olink Cardiometabolic" | "Olink Cardiometabolic" [571]
[572] "Olink Inflammation" | "Olink Inflammation" [572]
[573] "Olink Inflammation" | "Olink Inflammation" [573]
[574] "Olink Cardiometabolic" - "Olink Inflammation" [574]
[575] "Olink Inflammation" - "Olink Cardiometabolic" [575]
[576] "Olink Cardiometabolic" | "Olink Cardiometabolic" [576]
[577] "Olink Cardiometabolic" | "Olink Cardiometabolic" [577]
[578] "Olink Cardiometabolic" | "Olink Cardiometabolic" [578]
actual | expected
[580] "Olink Inflammation" | "Olink Inflammation" [580]
[581] "Olink Inflammation" | "Olink Inflammation" [581]
[582] "Olink Cardiometabolic" | "Olink Cardiometabolic" [582]
[583] "Olink Inflammation" - "Olink Cardiometabolic" [583]
[584] "Olink Cardiometabolic" - "Olink Inflammation" [584]
[585] "Olink Cardiometabolic" | "Olink Cardiometabolic" [585]
[586] "Olink Inflammation" | "Olink Inflammation" [586]
[587] "Olink Cardiometabolic" | "Olink Cardiometabolic" [587]
actual | expected
[597] "Olink Cardiometabolic" | "Olink Cardiometabolic" [597]
[598] "Olink Cardiometabolic" | "Olink Cardiometabolic" [598]
[599] "Olink Cardiometabolic" | "Olink Cardiometabolic" [599]
[600] "Olink Inflammation" - "Olink Cardiometabolic" [600]
[601] "Olink Cardiometabolic" - "Olink Inflammation" [601]
[602] "Olink Cardiometabolic" | "Olink Cardiometabolic" [602]
[603] "Olink Inflammation" | "Olink Inflammation" [603]
[604] "Olink Inflammation" | "Olink Inflammation" [604]
actual | expected
[629] "Olink Cardiometabolic" | "Olink Cardiometabolic" [629]
[630] "Olink Inflammation" | "Olink Inflammation" [630]
[631] "Olink Inflammation" | "Olink Inflammation" [631]
[632] "Olink Inflammation" - "Olink Cardiometabolic" [632]
[633] "Olink Cardiometabolic" - "Olink Inflammation" [633]
[634] "Olink Cardiometabolic" | "Olink Cardiometabolic" [634]
[635] "Olink Cardiometabolic" | "Olink Cardiometabolic" [635]
[636] "Olink Cardiometabolic" - "Olink Inflammation" [636]
[637] "Olink Inflammation" - "Olink Cardiometabolic" [637]
[638] "Olink Inflammation" | "Olink Inflammation" [638]
... ... ... and 2 more ...
actual | expected
[664] "Olink Cardiometabolic" | "Olink Cardiometabolic" [664]
[665] "Olink Inflammation" | "Olink Inflammation" [665]
[666] "Olink Cardiometabolic" | "Olink Cardiometabolic" [666]
[667] "Olink Inflammation" - "Olink Cardiometabolic" [667]
[668] "Olink Cardiometabolic" - "Olink Inflammation" [668]
[669] "Olink Inflammation" | "Olink Inflammation" [669]
[670] "Olink Inflammation" | "Olink Inflammation" [670]
[671] "Olink Inflammation" | "Olink Inflammation" [671]
actual | expected
[749] " 1.160215680" | " 1.160215680" [749]
[750] " 1.072296184" | " 1.072296184" [750]
[751] " 0.952543206" | " 0.952543206" [751]
[752] " 0.382271020" - "-0.198380421" [752]
[753] "-0.198380421" - " 0.382271020" [753]
[754] " 0.644643726" | " 0.644643726" [754]
[755] " 0.942077775" | " 0.942077775" [755]
[756] " 0.889961354" | " 0.889961354" [756]
[757] " 0.291268709" | " 0.291268709" [757]
[758] " 1.170541679" - "-0.977150825" [758]
... ... ... and 5 more ...
actual | expected
[764] "-0.849226128" | "-0.849226128" [764]
[765] "-0.236367098" | "-0.236367098" [765]
[766] "-0.844514828" | "-0.844514828" [766]
[767] "-0.738335768" - " 0.682713984" [767]
[768] " 0.682713984" - "-0.738335768" [768]
[769] "-0.512783973" | "-0.512783973" [769]
[770] "-0.356181060" | "-0.356181060" [770]
[771] " 0.619819102" | " 0.619819102" [771]
[772] "-0.332274524" | "-0.332274524" [772]
[773] "-0.770723739" | "-0.770723739" [773]
... ... ... and 5 more ...
actual | expected
[781] " 0.734581514" | " 0.734581514" [781]
[782] " 0.242241808" | " 0.242241808" [782]
[783] "-0.530435655" | "-0.530435655" [783]
[784] " 0.837859442" - "-0.482173898" [784]
[785] "-0.482173898" - " 0.837859442" [785]
[786] "-0.576591665" | "-0.576591665" [786]
[787] "-0.746334346" - " 0.273839886" [787]
[788] " 0.273839886" - "-0.746334346" [788]
[789] "-0.635003833" - " 0.293908178" [789]
[790] " 0.293908178" - "-0.635003833" [790]
... ... ... and 8 more ...
actual | expected
[813] " 0.506740204" | " 0.506740204" [813]
[814] "-0.513164920" | "-0.513164920" [814]
[815] "-0.108724424" | "-0.108724424" [815]
[816] "-0.461416727" - " 0.223968347" [816]
[817] " 0.223968347" - "-0.461416727" [817]
[818] "-0.302170312" | "-0.302170312" [818]
[819] " 0.549030911" | " 0.549030911" [819]
[820] " 0.250690531" - "-0.311322452" [820]
[821] " 0.447311978" - " 0.250690531" [821]
[822] "-0.311322452" - " 0.447311978" [822]
... ... ... and 3 more ...
actual | expected
[848] "-0.209502890" | "-0.209502890" [848]
[849] "-0.332523610" | "-0.332523610" [849]
[850] "-0.196025336" | "-0.196025336" [850]
[851] "-0.122220630" - " 0.332851914" [851]
[852] " 0.332851914" - "-0.122220630" [852]
[853] "-0.177529425" | "-0.177529425" [853]
[854] " 0.262205051" | " 0.262205051" [854]
[855] " 0.127224916" | " 0.127224916" [855]
actual | expected
[933] "902" | "902" [933]
[934] "881" | "881" [934]
[935] "881" | "881" [935]
[936] "880" - "498" [936]
[937] "498" - "880" [937]
[938] "875" | "875" [938]
[939] "875" | "875" [939]
[940] "874" | "874" [940]
[941] "874" | "874" [941]
[942] "869" - "509" [942]
... ... ... and 5 more ...
actual | expected
[948] "517" | "517" [948]
[949] "519" | "519" [949]
[950] "527" | "527" [950]
[951] "531" - "847" [951]
[952] "847" - "531" [952]
[953] "536" | "536" [953]
[954] "537" | "537" [954]
[955] "841" | "841" [955]
[956] "539" | "539" [956]
[957] "541" | "541" [957]
... ... ... and 5 more ...
actual | expected
[965] "818" | "818" [965]
[966] "816" | "816" [966]
[967] "563" | "563" [967]
[968] "814" - "564" [968]
[969] "564" - "814" [969]
[970] "566" | "566" [970]
[971] "567" - "811" [971]
[972] "811" - "567" [972]
[973] "568" - "810" [973]
[974] "810" - "568" [974]
... ... ... and 8 more ...
actual | expected
[997] "783" | "783" [997]
[998] "596" | "596" [998]
[999] "601" | "601" [999]
[1000] "602" - "776" [1000]
[1001] "776" - "602" [1001]
[1002] "603" | "603" [1002]
[1003] "774" | "774" [1003]
[1004] "774" - "604" [1004]
[1005] "774" | "774" [1005]
[1006] "604" - "774" [1006]
... ... ... and 3 more ...
`actual[1032:1039]`: "631" "631" "631" "633" "745" "637" "738" "737"
`expected[1032:1039]`: "631" "631" "631" "745" "633" "637" "738" "737"
actual | expected
[1301] "-0.01611232" | "-0.01611232" [1301]
[1302] "-0.17728029" | "-0.17728029" [1302]
[1303] "-0.16918491" | "-0.16918491" [1303]
[1304] "-0.05011636" - "-0.41359248" [1304]
[1305] "-0.41359248" - "-0.05011636" [1305]
[1306] "-0.16714780" | "-0.16714780" [1306]
[1307] "-0.20840507" | "-0.20840507" [1307]
[1308] "-0.17056251" | "-0.17056251" [1308]
[1309] "-0.05202272" | "-0.05202272" [1309]
[1310] "-0.26386042" - "-2.36093686" [1310]
... ... ... and 5 more ...
actual | expected
[1316] "-1.94712946" | "-1.94712946" [1316]
[1317] "-0.47481321" | "-0.47481321" [1317]
[1318] "-2.08478385" | "-2.08478385" [1318]
[1319] "-2.00490763" - "-0.22364889" [1319]
[1320] "-0.22364889" - "-2.00490763" [1320]
[1321] "-1.30346918" | "-1.30346918" [1321]
[1322] "-0.88110689" | "-0.88110689" [1322]
[1323] "-0.40842228" | "-0.40842228" [1323]
[1324] "-0.76397242" | "-0.76397242" [1324]
[1325] "-1.90519043" | "-1.90519043" [1325]
... ... ... and 5 more ...
actual | expected
[1333] "-0.59542163" | "-0.59542163" [1333]
[1334] "-0.17019523" | "-0.17019523" [1334]
[1335] "-1.35261178" | "-1.35261178" [1335]
[1336] "-0.64272021" - "-1.10148209" [1336]
[1337] "-1.10148209" - "-0.64272021" [1337]
[1338] "-1.57748278" | "-1.57748278" [1338]
[1339] "-1.69880223" - "-0.20690503" [1339]
[1340] "-0.20690503" - "-1.69880223" [1340]
[1341] "-1.87885967" - "-0.25245963" [1341]
[1342] "-0.25245963" - "-1.87885967" [1342]
... ... ... and 8 more ...
actual | expected
[1365] "-0.70240241" | "-0.70240241" [1365]
[1366] "-1.74251614" | "-1.74251614" [1366]
[1367] "-0.36475006" | "-0.36475006" [1367]
[1368] "-1.52819235" - "-0.31435863" [1368]
[1369] "-0.31435863" - "-1.52819235" [1369]
[1370] "-1.08044527" | "-1.08044527" [1370]
[1371] "-0.78697019" | "-0.78697019" [1371]
[1372] "-0.31999118" - "-1.03368182" [1372]
[1373] "-0.74719502" - "-0.31999118" [1373]
[1374] "-1.03368182" - "-0.74719502" [1374]
... ... ... and 3 more ...
actual | expected
[1400] "-0.97390867" | "-0.97390867" [1400]
[1401] "-1.35920370" | "-1.35920370" [1401]
[1402] "-1.00335174" | "-1.00335174" [1402]
[1403] "-0.64813480" - "-0.93595234" [1403]
[1404] "-0.93595234" - "-0.64813480" [1404]
[1405] "-0.83619949" | "-0.83619949" [1405]
[1406] "-0.93319962" | "-0.93319962" [1406]
[1407] "-0.44758898" | "-0.44758898" [1407]
actual | expected
[1485] " 2.32444725" | " 2.32444725" [1485]
[1486] " 2.38859437" | " 2.38859437" [1486]
[1487] " 2.00622300" | " 2.00622300" [1487]
[1488] " 0.79241879" - " 0.02618863" [1488]
[1489] " 0.02618863" - " 0.79241879" [1489]
[1490] " 1.37898956" | " 1.37898956" [1490]
[1491] " 2.00898163" | " 2.00898163" [1491]
[1492] " 1.85053792" | " 1.85053792" [1492]
[1493] " 0.65463967" | " 0.65463967" [1493]
[1494] " 2.52791324" - " 0.23827952" [1494]
... ... ... and 5 more ...
actual | expected
[1500] " 0.17990017" | " 0.17990017" [1500]
[1501] " 0.07146536" | " 0.07146536" [1501]
[1502] " 0.34900404" | " 0.34900404" [1502]
[1503] " 0.26468733" - " 1.57271035" [1503]
[1504] " 1.57271035" - " 0.26468733" [1504]
[1505] " 0.28098873" | " 0.28098873" [1505]
[1506] " 0.17517240" | " 0.17517240" [1506]
[1507] " 1.60723417" | " 1.60723417" [1507]
[1508] " 0.11211347" | " 0.11211347" [1508]
[1509] " 0.41348643" | " 0.41348643" [1509]
... ... ... and 5 more ...
actual | expected
[1517] " 1.76094626" | " 1.76094626" [1517]
[1518] " 0.63956588" | " 0.63956588" [1518]
[1519] " 0.35136862" | " 0.35136862" [1519]
[1520] " 2.25847216" - " 0.27246521" [1520]
[1521] " 0.27246521" - " 2.25847216" [1521]
[1522] " 0.55732308" | " 0.55732308" [1522]
[1523] " 0.56640747" - " 0.74796891" [1523]
[1524] " 0.74796891" - " 0.56640747" [1524]
[1525] " 0.62090796" - " 0.96555395" [1525]
[1526] " 0.96555395" - " 0.62090796" [1526]
... ... ... and 8 more ...
actual | expected
[1549] " 1.82691825" | " 1.82691825" [1549]
[1550] " 0.63188855" | " 0.63188855" [1550]
[1551] " 0.14245514" | " 0.14245514" [1551]
[1552] " 0.63224778" - " 0.72294531" [1552]
[1553] " 0.72294531" - " 0.63224778" [1553]
[1554] " 0.48860234" | " 0.48860234" [1554]
[1555] " 2.03107029" | " 2.03107029" [1555]
[1556] " 0.87373833" - " 0.38868254" [1556]
[1557] " 1.68993463" - " 0.87373833" [1557]
[1558] " 0.38868254" - " 1.68993463" [1558]
... ... ... and 3 more ...
actual | expected
[1584] " 0.53925169" | " 0.53925169" [1584]
[1585] " 1.03000975" | " 1.03000975" [1585]
[1586] " 0.49099924" | " 0.49099924" [1586]
[1587] " 0.36444517" - " 1.27475005" [1587]
[1588] " 1.27475005" - " 0.36444517" [1588]
[1589] " 0.46672275" | " 0.46672275" [1589]
[1590] " 1.44274177" | " 1.44274177" [1590]
[1591] " 0.71430189" | " 0.71430189" [1591]
[ FAIL 2 | WARN 0 | SKIP 38 | PASS 520 ]
Deleting unused snapshots:
• Olink_boxplot/boxplot-site-10prots.svg
• Olink_boxplot/boxplot-site-2prots.svg
• Olink_boxplot/boxplot-time-and-site.svg
• Olink_boxplot/boxplot-time-with-coloroption.svg
• Olink_boxplot/boxplot-time.svg
• Volcano_plot/volcano-plot-with-coloroption.svg
• dist_plot/distribution-plot-col-by-treatment.svg
• linear_mixed_model/lmer-plot-more-prots-than-space.svg
• linear_mixed_model/lmer-plot.svg
• olink_bridgeability_plot/bridgeable-plot-oid40835.svg
• olink_qc_plot/qc-plot-with-coloroption.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc