9ac44305075475c57024f257e416dab9 *DESCRIPTION
5e075de42934a408cd7829c0f5057609 *NAMESPACE
710ef9791e6ae77e284b7845c695887e *NEWS.md
7034f1a6569fdee6ca6bdc33525bdd35 *R/RcppExports.R
767e9766da93dd588bba000b6a2460ec *R/catch-routine-registration.R
7aba46b446e03dffeb039eb9e78196e3 *R/cluster.R
b627b5ce4ce37860183e1bec14e6b061 *R/cluster_data_converters.R
4aa02ec098f0d61e2bd7bae8bb559654 *R/cluster_object-getters.R
1952527e50ccf93678c7c6c682fef4ba *R/clustur-package.R
8d85e576137b0f920b3d777233208871 *R/distance_object-getters.R
d0480987c68ecc6e4616355e75f1aef6 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
c3019371eecc87a8a2f83493a1643cd3 *build/vignette.rds
78a4d68fe0b67a332b7c9932e843ff48 *inst/doc/clustur.R
64f1f0826c8d9015c1aa6569ade7e049 *inst/doc/clustur.Rmd
7d7a62350f6fd8b779006a8c41c8dd7a *inst/doc/clustur.html
369d139fdb5c0893b1b82ef97aaa01ac *inst/extdata/amazon.full.count_table
9eb2a743407fad65c1164a9e711f6493 *inst/extdata/amazon.sparse.count_table
e4f379690d24c3551a6314c481bafafd *inst/extdata/amazon_column.dist
4767aa890ebe404456f9a88479d4181f *inst/extdata/amazon_phylip.dist
86695cd91b7a4a4c3e3fd417fb6c05c9 *man/cluster.Rd
456b3bdcc9df9cfce26d241f7b9af388 *man/clustur-package.Rd
71dc529167bbe5035cc9d935c9a6c6c5 *man/create_sparse_matrix.Rd
f09820c1e8f90093660ca48fef7248c0 *man/example_path.Rd
2c7ad760f9a7548869f5773bfe4606f1 *man/get_abundance.Rd
799721b6159dfe10d48f56fec52bddaf *man/get_bins.Rd
fc6a90da9d4955292d9f1daac1a768a5 *man/get_count_table.Rd
7805decbd2123bdec9cae0d882914140 *man/get_cutoff.Rd
199a7401f5309fd7848a972d430cb4f5 *man/get_distance_df.Rd
73b1d7aa7db8a973671bb274ffc9a904 *man/get_metrics.Rd
5c8d19fc9f8e26bcc6ff6662df7576f6 *man/read_count.Rd
e3c056e200868d5c3af7ff4caa5a0e58 *man/read_dist.Rd
2656adc797c641be37533a0105f7cc61 *man/split_clusters_to_list.Rd
8d2be5010e44a5d45d9dcf22516b1ee6 *man/validate_count_table.Rd
dec516a44c20ed7819a3b8cadaafce3c *src/Adapters/CountTableAdapter.h
fc02895bcdf2d6ff96fe594e7d846105 *src/Adapters/DataFrameAdapter.h
b150343a179514ac8863b105a6d7fa4c *src/Adapters/DistanceFileReader.h
89085f9f10e98de3fd3255c5c4407bf3 *src/Adapters/MatrixAdapter.h
be6d99526d5fd8930b4a223c7fd0becf *src/Adapters/OptimatrixAdapter.h
2435191adba00c9988c2eaee24e098da *src/AverageLinkage.cpp
9ca237d58f8500b20f2ae0397570f256 *src/Cluster.cpp
bd13e038066448f6cbf9f8c6f828cf23 *src/ClusterCommand.cpp
767b075c24769e751eec2c8ee34f7a51 *src/ClusterData.cpp
16f5f5cdc98eb2db47e7d98708956d62 *src/ClusterDataTestFixture.cpp
fb1d60adbeaeaabed3d145c957255918 *src/ClusterExportTestFixture.cpp
d622f60d442e193673e517e4dced9809 *src/ClusterTestFixture.cpp
9f9511595077beb9bbe182e4e493a3dc *src/ColumnDistanceMatrixReader.cpp
83e85a6488c82ba47657609780986209 *src/ColumnReaderTestFixture.cpp
7d79cf68c85da1bb65e04554c9134e58 *src/CompleteLinkage.cpp
69034b4372cc25932e209f46e708d9a8 *src/CountTableAdapter.cpp
9747cf801c86ab4eebfdbf2b7fd5b776 *src/CountTableAdapterTestFixture.cpp
ab2c4681911a486af9a8418b31215430 *src/DataFrameAdapter.cpp
75a720ce0632861eaa0138faf7ac9757 *src/DataFrameAdapterTestFixture.cpp
dfc622afa89dbd5a1c89ddf11be393ce *src/DataStructures/IndexAbundancePair.h
54f7ceebd7fe6a9c8bcfe5debab4dab3 *src/DistanceFileReader.cpp
cc36d1d5116f81a47b52390efdef3f6b *src/ListVector.cpp
9223dd87698f6193f3a6e134d4ab75b0 *src/ListVectorTestFixture.cpp
31f8c90fdec27c2aa7c565a02c2d8bef *src/MatrixAdapter.cpp
d1114263c00d8d65d20a9be41a3078a0 *src/MatrixAdapterTestFixture.cpp
26600457f0cb94a58163b79d4a72cb3a *src/MothurDependencies/AverageLinkage.h
cec98558f378a564b61f1e96f1cc030b *src/MothurDependencies/Cluster.h
5ef38251d69a5c2eb1021ba184511140 *src/MothurDependencies/ClusterCommand.h
c139b080da19ee4a85c09650dc74877a *src/MothurDependencies/ClusterData.h
041cddbc153803dbd3dd186805f6108b *src/MothurDependencies/ClusterExport.h
0a1f57b5aebc30e3b4b03a0322e16c56 *src/MothurDependencies/ClusterMetric.cpp
1bd8ddaf77ff1f6a203ca042d5ef26c6 *src/MothurDependencies/ClusterMetric.h
53e83e799059fe12ebd14eab6e8d15c5 *src/MothurDependencies/ColumnDistanceMatrixReader.h
6b1a37b8b0d4c3d4d9b48316bdf22f9a *src/MothurDependencies/CompleteLinkage.h
187f5d60f4460379e2db8f1b08b6d065 *src/MothurDependencies/DataVector.h
e82964144a07563584a6ea7e0fefe013 *src/MothurDependencies/ListVector.h
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4d5e0af6254d95912c4b84fd37de6bd9 *src/MothurDependencies/Metrics/f1score.hpp
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ef7e263c95e45cc48c704efce606d3eb *src/MothurDependencies/Metrics/tn.hpp
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8233eb286cfbb7616028615f028b8a34 *src/MothurDependencies/OptiCluster.h
ee3ec94258fcfc9e8ee41fa9ca3fa228 *src/MothurDependencies/OptiData.h
d437072836de0829f9932e742d6adb1b *src/MothurDependencies/OptiMatrix.h
299691a9c3b5d1dd0f52ca614bf0e11e *src/MothurDependencies/OpticlusterData.h
d013447a68d5cb9fdefb2bf23c8d4db3 *src/MothurDependencies/OtuAbundancePair.h
ddd2daf3bf42a866be1845099c22c55a *src/MothurDependencies/PDistCell.h
61bbbd748cae8e33259f18cac1068c21 *src/MothurDependencies/RAbundVector.h
d65ccb48831de6768c0a9639cbe88846 *src/MothurDependencies/ReadPhylipMatrix.h
1475f64e0b95c4815608bfd2631c5293 *src/MothurDependencies/SharedFile.h
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bcea72695d5272c9e158c1effda24fd4 *src/MothurDependencies/SparseDistanceMatrix.h
c64a62326c8ff6f88dce8b75aa1c5508 *src/MothurDependencies/Utils.h
9247c6ebdeb9f884eeac5ca6c6f4f9a3 *src/MothurDependencies/WeightedLinkage.h
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cc4ca09c863d0caeb62b1c0de06d6562 *src/OptiClusterTestFixture.cpp
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79c7aa794fa76590af6f376d7dc785d7 *src/OptiDataTestFixture.cpp
6dce580058268bd202d0c0ad64415323 *src/OptiMatrix.cpp
048456b33135e0a88ad7340267ae22ac *src/OpticlusterData.cpp
ea293d97301208fcf373150fb5fed858 *src/OptimatrixAdapter.cpp
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7e7b70741c824cb998c11a5812134898 *src/PhylipReaderTestFixture.cpp
5c3b37786797d73807bf6a92b5c3a989 *src/RAbundVector.cpp
049d11a0bac4bd58233de9e6c74e0448 *src/RAbundVectorTestFixture.cpp
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abdd4fbb9f8921e778be7bdfb3fcbe04 *src/ReadPhylipMatrix.cpp
603b483ce1138b6d651825fa4a872e33 *src/SharedFile.cpp
0bafd6ab9ca3e55d6b01881d637298fa *src/SharedFileBuilder.cpp
86a2376ca50371c91abb021d3e58b732 *src/SharedFileBuilderTestFixture.cpp
0893c9ba2b13b6fce090f9578ac94e5b *src/SharedFileTestFixture.cpp
1327aa8bc67e565aa97b601029fbab83 *src/SingleLinkage.cpp
6dab432686348cf5070a9c6cb660addc *src/SparseDistanceMatrix.cpp
74004c201bc7d5ebaf74d0462f6d193e *src/SparseMatrixTestFixture.cpp
3f7cf0592713c853bd558ba090642670 *src/Tests/ClusterDataTestFixture.h
6fe7e27bd0ef3e5ed5ffa659b36f3ab0 *src/Tests/ClusterExportTestFixture.h
00ea0c2cd4a99bb60c33f3bbc9b18a8f *src/Tests/ClusterTestFixture.h
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853abe69322d817c013e940e6af5ace5 *src/Tests/CountTableAdapterTestFixture.h
b8738c79e565dcba3cafd19b37b1fb37 *src/Tests/DataFrameAdapterTestFixture.h
ebe89559cf5ec41fbb0b757b2eccd47f *src/Tests/ListVectorTestFixture.h
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c9d52a569f44441453bf0c28227177a7 *src/Tests/OptiClusterTestFixture.h
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d6b4b5eba11548ceb7ddf6b4b30ab94f *src/Tests/PhylipReaderTestFixture.h
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32a93dfa50ebd569f0b8837dba9e94b2 *src/Tests/SharedFileTestFixture.h
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9bb7972c6cd1207d35ae94b953cb0820 *src/Tests/UtilsTestFixture.h
1ca93a175b5baf86fc516537b5c88e6a *src/Utils.cpp
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160d8fd642c7895880d4abfecd7a32ab *src/WeightedLinkage.cpp
1fd74a287201880197f7d5695cdb2519 *src/main.cpp
9d9cce8ebf99e68913b30b92bb24c3fb *src/test-Cluster_Data.cpp
5242f7d5903d3088e1d3ff8bf5e83055 *src/test-OptiCluster_data.cpp
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7164d53670b1052262809f3318e902e8 *src/test-Shared_File_Builder.cpp
c92e2d6f091cf0a47016d7b74f6e9a8e *src/test-cluster.cpp
0b40b437d2b543ca94ef587ce5d446cf *src/test-cluster_export.cpp
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ed16f4a8504fc234ec6569f67ebbb616 *src/test-data_frame_adapter.cpp
6972e41754e3f54688907beacd655ac5 *src/test-list-vector.cpp
345e6c9387843fc1a56ba89818ab79bf *src/test-matrix_adapter.cpp
a6d0ebb7e45ecebc190cb7a8ec136d25 *src/test-opticluster.cpp
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c2cb0c30e10da611f9fbe56aea52f7a9 *src/test-runner.cpp
e71083e423a90608080c36027f65027f *src/test-sparse_matrix.cpp
974ee4dd0a429e75e6f5c2abef232035 *src/test-utils.cpp
81596890337f6a0a2afe456fbec029da *tests/testthat.R
a5ee0f95814507a77cfd2c2adb8f7a77 *tests/testthat/extdata/abundance_results_opticluster.csv
4253268449a06b4168824ba5045665a5 *tests/testthat/extdata/amazon.count_table
369d139fdb5c0893b1b82ef97aaa01ac *tests/testthat/extdata/amazon.full.count_table
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2cc6677144603e34b8b5b67b45a13729 *tests/testthat/extdata/amazon_opti_results.RDS
4767aa890ebe404456f9a88479d4181f *tests/testthat/extdata/amazon_phylip.dist
464cf5c128cd2d161e09038b2b2addf3 *tests/testthat/test-cluster_object-getters.R
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a561a6e03f06f73c5182081fbb4f3dcb *tests/testthat/test-test-opticluster.R
64f1f0826c8d9015c1aa6569ade7e049 *vignettes/clustur.Rmd
