Package: bbmix
Title: Bayesian Model for Genotyping using RNA-Seq
Version: 1.0.0
Authors@R: c(
    person("Elena", "Vigorito", email = "elena.vigorito@mrc-bsu.cam.ac.uk",  role = c("aut", "cre")),
    person("Chris", "Wallace", email="cew54@cam.ac.uk", role="aut"))
Description: The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) <doi:10.1093/bioinformatics/btad393> "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."
License: GPL-2
Encoding: UTF-8
Biarch: true
Depends: R (>= 3.4.0)
Imports: methods, Rcpp (>= 0.12.0), rstan (>= 2.18.1), R.utils,
        data.table, rmutil
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        rstan (>= 2.18.1), StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2023-07-05 18:36:26 UTC; ev250
Author: Elena Vigorito [aut, cre],
  Chris Wallace [aut]
Maintainer: Elena Vigorito <elena.vigorito@mrc-bsu.cam.ac.uk>
Repository: CRAN
Date/Publication: 2023-07-06 14:00:09 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2025-12-22 05:17:11 UTC; windows
Archs: x64
