* using log directory 'd:/Rcompile/CRANpkg/local/4.6/GPCERF.Rcheck' * using R Under development (unstable) (2026-01-10 r89298 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GPCERF/DESCRIPTION' ... OK * this is package 'GPCERF' version '0.2.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GPCERF' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 14.3.0' * checking C++ specification ... INFO specified C++17 * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking whether startup messages can be suppressed ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [5s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [142s] ERROR Running 'testthat.R' [142s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-12 07:27:55.085271 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-12 07:28:00.734273 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-12 07:28:06.333021 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-12 07:28:15.354447 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:20.706229 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:26.45825 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=51324 on localhost:11099 at 07:28:26.723 2026-01-12 07:28:29.353262 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.89 s. 2026-01-12 07:28:29.392454 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:34.929722 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:40.280546 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-12 07:28:45.868206 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:50.73847 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:28:54.373816 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:28:58.281684 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:28:58.296981 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:03.53417 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.546627 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.558681 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.570986 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.583571 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.596624 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.609647 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:03.62384 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:08.880973 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 starting worker pid=27008 on localhost:11099 at 07:29:09.124 starting worker pid=109168 on localhost:11099 at 07:29:09.181 2026-01-12 07:29:15.976611 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:21.365297 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:21.368235 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:21.372494 CRANWIN3 67876 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=58288 on localhost:11099 at 07:29:21.609 2026-01-12 07:29:24.501751 CRANWIN3 67876 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.11999999999999 s.} ... 2026-01-12 07:29:24.504732 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=74780 on localhost:11099 at 07:29:24.775 2026-01-12 07:29:27.333448 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.83000000000001 s. 2026-01-12 07:29:27.335994 CRANWIN3 67876 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=105340 on localhost:11099 at 07:29:27.598 2026-01-12 07:29:31.00509 CRANWIN3 67876 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.66999999999999 s. 2026-01-12 07:29:31.007554 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.64 s. 2026-01-12 07:29:31.01194 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:31.014338 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:31.026652 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:31.029263 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:31.061821 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:31.064105 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:31.073727 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:35.239375 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:35.242999 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:35.2558 CRANWIN3 67876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-10 r89298 ucrt), detected cores: 96 2026-01-12 07:29:35.2586 CRANWIN3 67876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-12 07:29:35.294164 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-12 07:29:40.500551 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:45.786708 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=73128 on localhost:11099 at 07:29:46.005 2026-01-12 07:29:48.580002 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.79000000000001 s. 2026-01-12 07:29:48.582476 CRANWIN3 67876 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=91008 on localhost:11099 at 07:29:48.856 2026-01-12 07:29:51.804175 CRANWIN3 67876 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.22 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-12 07:29:51.862928 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:29:56.092324 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:30:01.166167 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=43384 on localhost:11099 at 07:30:01.399 2026-01-12 07:30:03.978578 CRANWIN3 67876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.81 s. 2026-01-12 07:30:04.030796 CRANWIN3 67876 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-12 07:30:09.523232 CRANWIN3 67876 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=100524 on localhost:11099 at 07:30:09.771 2026-01-12 07:30:13.176358 CRANWIN3 67876 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.66 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [130s] OK * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 1 ERROR