* using log directory 'd:/Rcompile/CRANpkg/local/4.6/senseweight.Rcheck'
* using R Under development (unstable) (2025-12-23 r89222 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'senseweight/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'senseweight' version '0.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'senseweight' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [7s] ERROR
Running examples in 'senseweight-Ex.R' failed
The error most likely occurred in:

> ### Name: contour_plot
> ### Title: Bias Contour Plots
> ### Aliases: contour_plot
> 
> ### ** Examples
> 
> # For the external validity setting: 
> data(jtpa_women)
> site_name <- "NE"
> df_site <- jtpa_women[which(jtpa_women$site == site_name), ]
> df_else <- jtpa_women[which(jtpa_women$site != site_name), ]
> 
> # Estimate unweighted estimator:
> model_dim <- estimatr::lm_robust(Y ~ T, data = df_site)
> PATE <- coef(lm(Y ~ T, data = df_else))[2]
> DiM <- coef(model_dim)[2]
> # Generate weights using observed covariates:
> df_all <- jtpa_women
> df_all$S <- ifelse(jtpa_women$site == "NE", 1, 0)
> model_ps <- WeightIt::weightit(
+   (1 - S) ~ . - site - T - Y, 
+   data = df_all, method = "ebal", estimand = "ATT"
+ )
> weights <- model_ps$weights[df_all$S == 1]
> # Estimate IPW model:
> model_ipw <- estimatr::lm_robust(Y ~ T, data = df_site, weights = weights)
> ipw <- coef(model_ipw)[2]
> # Estimate bound for var(tau):
> vartau <- var(df_site$Y[df_site$T == 1]) - var(df_site$Y[df_site$T == 0])
> RV <- robustness_value(estimate = ipw, b_star = 0, sigma2 = vartau, weights = weights)
> 
> # Select weighting variables:
> weighting_vars <- names(df_all)[which(!names(df_all) %in% c("site", "S", "Y", "T"))]
> 
> # Run benchmarking:
> df_benchmark <- run_benchmarking(
+   weighting_vars = weighting_vars,
+   data = df_all[, -1],
+   treatment = "T", outcome = "Y", selection = "S",
+   estimate = ipw,
+   RV = RV, sigma2 = vartau,
+   estimand = "PATE"
+ )
> # Generate bias contour plot:
> contour_plot(
+ var(weights), vartau, ipw, df_benchmark,
+ benchmark = TRUE, shade = TRUE,
+ shade_var = c("age", "prevearn"),
+ label_size = 4
+ ) 
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the senseweight package.
  Please report the issue to the authors.
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_gtable(data)
  4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$draw_geom(d, layout)
 14. │         └─ggplot2 (local) draw_geom(..., self = self)
 15. │           └─self$geom$draw_layer(...)
 16. │             └─ggplot2 (local) draw_layer(..., self = self)
 17. │               └─base::lapply(...)
 18. │                 └─ggplot2 (local) FUN(X[[i]], ...)
 19. │                   ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 20. │                   └─self$draw_panel(...)
 21. │                     └─metR (local) draw_panel(...)
 22. │                       ├─data[, `:=`(N, .N), by = .(group, piece)]
 23. │                       └─data.table:::`[.data.table`(...)
 24. └─base::.handleSimpleError(...)
 25.   └─rlang (local) h(simpleError(msg, call))
 26.     └─handlers[[1L]](cnd)
 27.       └─cli::cli_abort(...)
 28.         └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [13s] ERROR
Error(s) in re-building vignettes:
--- re-building 'external-validity.Rmd' using rmarkdown

Quitting from external-validity.Rmd:115-122 [contour_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
     ▆
  1. ├─base::withVisible(knit_print(x, ...))
  2. ├─knitr::knit_print(x, ...)
  3. └─knitr:::knit_print.default(x, ...)
  4.   └─knitr::normal_print(x)
  5.     ├─base::print(x)
  6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
  7.       ├─ggplot2::ggplot_gtable(data)
  8.       └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  9.         └─ggplot2:::by_layer(...)
 10.           ├─rlang::try_fetch(...)
 11.           │ ├─base::tryCatch(...)
 12.           │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.           │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.           │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 15.           │ └─base::withCallingHandlers(...)
 16.           └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 17.             └─l$draw_geom(d, layout)
 18.               └─ggplot2 (local) draw_geom(..., self = self)
 19.                 └─self$geom$draw_layer(...)
 20.                   └─ggplot2 (local) draw_layer(..., self = self)
 21.                     └─base::lapply(...)
 22.                       └─ggplot2 (local) FUN(X[[i]], ...)
 23.                         ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 24.                         └─self$draw_panel(...)
 25.                           └─metR (local) draw_panel(...)
 26.                             ├─data[, `:=`(N, .N), by = .(group, piece)]
 27.                             └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'external-validity.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building 'external-validity.Rmd'

--- re-building 'survey.Rmd' using rmarkdown

Quitting from survey.Rmd:158-165 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `metR::geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
     ▆
  1. ├─base::withVisible(knit_print(x, ...))
  2. ├─knitr::knit_print(x, ...)
  3. └─knitr:::knit_print.default(x, ...)
  4.   └─knitr::normal_print(x)
  5.     ├─base::print(x)
  6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
  7.       ├─ggplot2::ggplot_gtable(data)
  8.       └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  9.         └─ggplot2:::by_layer(...)
 10.           ├─rlang::try_fetch(...)
 11.           │ ├─base::tryCatch(...)
 12.           │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.           │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.           │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 15.           │ └─base::withCallingHandlers(...)
 16.           └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 17.             └─l$draw_geom(d, layout)
 18.               └─ggplot2 (local) draw_geom(..., self = self)
 19.                 └─self$geom$draw_layer(...)
 20.                   └─ggplot2 (local) draw_layer(..., self = self)
 21.                     └─base::lapply(...)
 22.                       └─ggplot2 (local) FUN(X[[i]], ...)
 23.                         ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
 24.                         └─self$draw_panel(...)
 25.                           └─metR (local) draw_panel(...)
 26.                             ├─data[, `:=`(N, .N), by = .(group, piece)]
 27.                             └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'survey.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building 'survey.Rmd'

SUMMARY: processing the following files failed:
  'external-validity.Rmd' 'survey.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 2 ERRORs