Application of NODEs in 'Monolix', 'NONMEM', and 'nlmixr2'


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Documentation for package ‘pmxNODE’ version 0.1.0

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copy_examples Copy examples to your folder
der_state_plot_mlx Generate Derivative versus State Plot (Monolix)
der_state_plot_nlmixr Generate Derivative versus State Plot (nlmixr2)
der_state_plot_nm Generate Derivative versus State Plot (NONMEM)
find_nmfe Finde path to NONMEM nmfe file
get_example_list List of examples available
indparm_extractor_mlx Monolix individual estimations extractor
indparm_extractor_nlmixr nlmixr individual estimations extractor
indparm_extractor_nm NONMEM individual estimations extractor
ind_der_state_plot_mlx Generate Derivative versus State Plot for individual parameter estimates (Monolix)
ind_der_state_plot_nlmixr Generate Derivative versus State Plot for individual parameter estimates (nlmixr2)
ind_der_state_plot_nm Generate Derivative versus State Plot for individual parameter estimates (NONMEM)
ind_rhs_plot_mlx Generate individual Right-hand side data plot (Monolix)
ind_rhs_plot_nlmixr Generate individual Right-hand side data plot (nlmixr2)
ind_rhs_plot_nm Generate individual Right-hand side data plot (NONMEM)
NN Neural Network ODE language in nlmixr2 langauage
NNbsv Change a population Neural Network model to a model with between subject variability
nn_converter_mlx NN converter for Monolix
nn_converter_nlmixr NN converter for nlmixr
nn_converter_nm NN converter for NONMEM
pre_fixef_extractor_mlx Monolix estimations extractor
pre_fixef_extractor_nm THETA extraction from results file
rhs_plot_mlx Generate Right-hand side data plot (Monolix)
rhs_plot_nlmixr Generate Right-hand side data plot (nlmixr2)
rhs_plot_nm Generate Right-hand side data plot (NONMEM)
run_mlx Run Monolix from R
run_nm Run NONMEM from R
software_initializer Initialize software (Suspended)