Search and Retrieve Scientific Publication Records from PubMed

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Documentation for package ‘easyPubMed’ version 3.1.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

custom_grep	Retrieve Text Between XML Tags
easyPubMed-class	Class easyPubMed.
epm_fetch	Fetch Raw Records from Pubmed.
epm_import_xml	Import PubMed Records from Local Files.
epm_parse	Extract Information from a Raw PubMed Record.
epm_parse_record	Extract Information from a Raw PubMed Record.
epm_query	Search for PubMed Records.
epm_query_by_fulltitle	Query PubMed by Full-length Title.
epm_query_by_pmid	Query PubMed by PMIDs.
epm_samples	Preprocessed PubMed Records and Data
epm_stopwords	PubMed Query Stopwords
fetchEPMData	Method fetchEPMData.
fetchEPMData-method	Method fetchEPMData.
fetch_pubmed_data	Retrieve PubMed Data in XML or TXT Format
getEPMData	Method getEPMData.
getEPMData-method	Method getEPMData.
getEPMJobList	Method getEPMJobList.
getEPMJobList-method	Method getEPMJobList.
getEPMMeta	Method getEPMMeta.
getEPMMeta-method	Method getEPMMeta.
getEPMMisc	Method getEPMMisc.
getEPMMisc-method	Method getEPMMisc.
getEPMQuery	Method getEPMQuery.
getEPMQuery-method	Method getEPMQuery.
getEPMRaw	Method getEPMRaw.
getEPMRaw-method	Method getEPMRaw.
getEPMUilist	Method getEPMUilist.
getEPMUilist-method	Method getEPMUilist.
get_epm_data	Get Processed Data from an easyPubMed Object.
get_epm_meta	Get Meta Data from an easyPubMed Object.
get_epm_raw	Get Raw Data from an easyPubMed Object.
get_epm_uilist	Get PubMed Record Identifiers from an easyPubMed Object.
get_pubmed_ids	Simple PubMed Record Search
initialize-method	Class easyPubMed.
parseEPMData	Method parseEPMData.
parseEPMData-method	Method parseEPMData.
print-method	Print method of the easyPubMed Class.
setEPMData	Method setEPMData.
setEPMData-method	Method setEPMData.
setEPMJobList	Method setEPMJobList.
setEPMJobList-method	Method setEPMJobList.
setEPMMeta	Method setEPMMeta.
setEPMMeta-method	Method setEPMMeta.
setEPMMisc	Method setEPMMisc.
setEPMMisc-method	Method setEPMMisc.
setEPMQuery	Method setEPMQuery.
setEPMQuery-method	Method setEPMQuery.
setEPMRaw	Method setEPMRaw.
setEPMRaw-method	Method setEPMRaw.
setEPMUilist	Method setEPMUilist.
setEPMUilist-method	Method setEPMUilist.
show-method	Show method of the easyPubMed Class.
table_articles_byAuth	Extract Publication and Affiliation Data from PubMed Records